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MN988536.1__QIG74364.1__EVC08_052__00052
Bact-VirMN988536.1__QIG74364.1__EVC08_052__00052
Identity
- Accession:
- MN988536 ↗
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-68
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3vkhA08 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 53.0 | 3.31e-01 | 82.8% | 35.6% |
| 3vkhB09 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 52.0 | 3.81e-01 | 82.8% | 68.3% |
| 3vkgA07 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 53.0 | 3.30e-01 | 85.9% | 39.5% |
| 2ya0A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 49.0 | 3.88e-01 | 100.0% | 41.4% |
| 2vhjA02 | 2.30.270.20 | Mainly Beta › Roll › duf1285 protein fold › | 0.61 | 32.0 | 3.30e-01 | 75.0% | 50.0% |
| 3kl0D01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.60 | 40.0 | 3.44e-01 | 100.0% | 41.5% |
| 2dvkA00 | 3.30.1960.10 | Alpha Beta › 2-Layer Sandwich › SSo0622-like fold › tRNA wybutosine-synthesizing-like | 0.60 | 41.0 | 3.07e-01 | 100.0% | 27.7% |
| 5ikuA01 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 40.0 | 3.39e-01 | 100.0% | 42.3% |
| 3kflA02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.59 | 40.0 | 3.35e-01 | 100.0% | 38.0% |
| 2vseA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 51.0 | 3.99e-01 | 98.4% | 100.0% |
| 2vseA04 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.58 | 51.0 | 3.98e-01 | 100.0% | 95.1% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.57 | 50.0 | 4.63e-01 | 100.0% | 89.3% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.57 | 46.0 | 3.60e-01 | 89.1% | 80.0% |
| 8badA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 49.0 | 3.82e-01 | 98.4% | 99.3% |
| 4m0wA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 45.0 | 3.46e-01 | 100.0% | 40.1% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.54 | 43.0 | 2.81e-01 | 89.1% | 59.2% |
| 1cmjA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.53 | 39.0 | 2.38e-01 | 79.7% | 71.4% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.52 | 37.0 | 2.86e-01 | 78.1% | 88.4% |
| 2p1gA02 | 2.30.260.10 | Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain | 0.51 | 45.0 | 3.91e-01 | 100.0% | 64.0% |
| 5amhA00 | 2.170.150.20 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Peptide methionine sulfoxide reductase. | 0.51 | 38.0 | 3.32e-01 | 84.4% | 88.7% |
| 5b71E00 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.51 | 36.0 | 3.32e-01 | 100.0% | 54.8% |
| 3s93A00 | 3.30.420.610 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like | 0.51 | 38.0 | 3.61e-01 | 82.8% | 91.3% |
| 3fvcA03 | 2.30.29.100 | Mainly Beta › Roll › PH-domain like › | 0.51 | 44.0 | 3.75e-01 | 100.0% | 90.9% |
| 2af6A01 | 3.30.70.3180 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 40.0 | 3.20e-01 | 87.5% | 91.6% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.51 | 40.0 | 2.61e-01 | 92.2% | 32.8% |
| 3nbxX04 | 2.40.128.430 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 43.0 | 3.73e-01 | 100.0% | 71.0% |
| 2k49A00 | 2.30.29.80 | Mainly Beta › Roll › PH-domain like › | 0.50 | 43.0 | 3.60e-01 | 100.0% | 82.2% |
| 2mdiA00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.50 | 35.0 | 3.74e-01 | 87.5% | 87.5% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3223830 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.76 | 38.0 | 4.23e-01 | 89.1% | 62.0% |
| 3309891 | 11.1.4.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7152 | 0.69 | 46.0 | 4.00e-01 | 100.0% | 44.0% |
| 3451979 | 11.1.4.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7152 | 0.68 | 46.0 | 3.99e-01 | 100.0% | 44.0% |
| 3815764 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.65 | 56.0 | 4.59e-01 | 100.0% | 63.2% |
| 3364438 | 101.1.2.75 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIF_alpha | 0.61 | 48.0 | 4.78e-01 | 84.4% | 96.9% |
| 3946976 | 2003.1.2.161 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › PF30338 | 0.60 | 42.0 | 3.18e-01 | 75.0% | 65.7% |
| 3451552 | 375.1.4.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain | 0.59 | 42.0 | 4.57e-01 | 98.4% | 88.9% |
| 3254217 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.57 | 45.0 | 4.48e-01 | 82.8% | 90.8% |
| 3366196 | 11.1.4.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › Pollen_Ole_e_1 | 0.57 | 39.0 | 3.15e-01 | 100.0% | 33.6% |
| 4960204 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 45.0 | 3.71e-01 | 100.0% | 48.3% |
| 3328508 | 2003.1.5.31 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GRAS | 0.55 | 45.0 | 2.79e-01 | 92.2% | 71.5% |
| 3715885 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.55 | 37.0 | 3.01e-01 | 73.4% | 39.3% |
| 3352059 | 11.1.1.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha | 0.54 | 44.0 | 3.40e-01 | 100.0% | 37.4% |
| 5037079 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 4.19e-01 | 100.0% | 84.6% |
| 4938262 | 3435.1.1.10 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › PF27341 | 0.53 | 40.0 | 2.87e-01 | 85.9% | 89.8% |
| 3181782 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.53 | 44.0 | 3.75e-01 | 100.0% | 54.5% |
| 3248521 | 11.2.1.8 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PTEN_C2 | 0.53 | 42.0 | 3.25e-01 | 100.0% | 38.0% |
| 3621883 | 7516.1.1.100 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › GT_PLOD | 0.53 | 43.0 | 3.00e-01 | 95.3% | 52.2% |
| 5073662 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.52 | 40.0 | 2.79e-01 | 84.4% | 28.6% |
| 3512361 | 101.1.2.137 ↗ | alpha arrays › HTH › HTH › winged helix domain › OST-HTH | 0.52 | 41.0 | 3.76e-01 | 87.5% | 95.3% |
| 3389071 | 11.1.1.63 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAP_alpha | 0.51 | 41.0 | 3.13e-01 | 100.0% | 36.3% |
| 3982982 | 2003.1.3.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › PF30338 | 0.51 | 44.0 | 2.76e-01 | 100.0% | 64.7% |
| 3589054 | 3114.1.1.1 ↗ | beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP | 0.51 | 44.0 | 3.97e-01 | 98.4% | 91.1% |
| 3302816 | 4.1.1.235 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 | 0.50 | 39.0 | 3.13e-01 | 84.4% | 63.8% |
| 3825121 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 44.0 | 4.09e-01 | 98.4% | 93.8% |
| 4780493 | 3293.1.1.1 ↗ | beta barrels › LARA domain › LARA domain › LARA domain › LARA_dom | 0.50 | 42.0 | 4.09e-01 | 96.9% | 100.0% |
| 3819113 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.50 | 43.0 | 2.88e-01 | 100.0% | 27.9% |
| 3404944 | 5.1.4.235 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_1st | 0.50 | 38.0 | 2.31e-01 | 81.2% | 99.3% |
D2
medium
residues 72-118
Domain cluster:
representative