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MN988536.1__QIG74368.1__EVC08_056__00056

Bact-Vir

MN988536.1__QIG74368.1__EVC08_056__00056

Identity

Accession:
MN988536 ↗
Kingdom:
phage

Quality

81.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N65

TaxID: 2509753

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 10-100
PDB
Domain cluster: rep: MT135025.1__QIW90817.1__GCAPEGMB_00502__00470__D13-107
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.80 43.0 3.94e-01 93.4% 41.7%
1a7wA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 37.0 4.22e-01 83.5% 70.6%
4wv4B00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.64 36.0 3.64e-01 76.9% 52.7%
3l8rA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.61 37.0 3.56e-01 72.5% 52.9%
2pmsC00 6.10.140.920 Special › Helix non-globular › Helix Hairpins › 0.54 43.0 4.05e-01 95.6% 69.7%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.51 42.0 2.94e-01 89.0% 44.1%
1r4vA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.51 39.0 3.38e-01 84.6% 64.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2725638 101.31.1.1 ↗ alpha arrays › HTH › Bacteriophage Sf6 terminase small subunit › Bacteriophage Sf6 terminase small subunit › Sf6_terminase 0.80 73.0 6.85e-01 100.0% 87.2%
4100012 327.13.1.5 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › SpoIIIAH 0.74 42.0 3.81e-01 95.6% 42.4%
3684830 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.70 52.0 5.12e-01 96.7% 72.0%
3438255 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.67 46.0 4.99e-01 89.0% 86.7%
4682501 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.66 53.0 5.13e-01 96.7% 77.0%
3472179 2004.1.1.104 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 0.66 50.0 3.41e-01 81.3% 93.3%
4293733 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.65 51.0 4.87e-01 98.9% 72.4%
3225544 4006.1.1.0 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain 0.64 46.0 4.47e-01 96.7% 68.0%
4232718 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.64 51.0 4.97e-01 96.7% 78.0%
4318541 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.63 50.0 4.78e-01 95.6% 73.3%
4129436 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.63 50.0 4.77e-01 100.0% 73.3%
3963743 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.61 44.0 4.25e-01 86.8% 65.7%
3169656 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.59 41.0 3.30e-01 86.8% 37.4%
4634395 4006.1.1.1 ↗ alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.57 44.0 4.27e-01 95.6% 74.3%
4928483 101.1.3.36 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_23 0.56 39.0 3.76e-01 71.4% 89.3%
4619870 5000.4.1.1 ↗ alpha arrays › Toxins' membrane translocation domains › delta-Endotoxin (insectocide), N-terminal domain › delta-Endotoxin (insectocide), N-terminal domain › Endotoxin_N 0.54 40.0 3.03e-01 79.1% 57.4%
3600284 109.4.1.1140 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_PEP5_VPS11 0.52 46.0 2.97e-01 100.0% 29.9%
3634026 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.52 42.0 3.33e-01 86.8% 81.7%
3957236 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 42.0 4.02e-01 94.5% 78.1%