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MN988536.1__QIG74380.1__EVC08_068__00068
Bact-VirMN988536.1__QIG74380.1__EVC08_068__00068
Identity
- Accession:
- MN988536 ↗
- Kingdom:
- phage
Quality
73.8
mean pLDDT
Cluster
View cluster (51 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 219-235_287-351_373-436
Domain cluster:
rep: MW512570.1__QVW56605.1__X__00003__D116-221
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7k7jA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 25.0 | 2.86e-01 | 93.2% | 58.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3076016 | 4056.1.1.4 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Head-tail_con | 0.74 | 56.0 | 6.20e-01 | 98.6% | 99.1% |
| 3824339 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 28.0 | 2.70e-01 | 91.1% | 38.2% |
| 3460637 | 5.1.4.15 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 | 0.53 | 42.0 | 2.91e-01 | 86.3% | 85.4% |
| 4943404 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.52 | 33.0 | 3.45e-01 | 83.6% | 68.5% |
| 3331566 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 27.0 | 2.98e-01 | 93.2% | 60.0% |
| 3439605 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.52 | 36.0 | 3.19e-01 | 89.0% | 47.4% |
D2
medium
residues 239-286
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.93 | 83.0 | 7.13e-01 | 95.8% | 100.0% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.91 | 84.0 | 6.33e-01 | 100.0% | 46.2% |
| 6r1nA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.90 | 83.0 | 6.32e-01 | 100.0% | 48.5% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.90 | 78.0 | 7.85e-01 | 100.0% | 93.8% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.90 | 83.0 | 5.72e-01 | 100.0% | 51.0% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 82.0 | 7.66e-01 | 100.0% | 84.5% |
| 1ij5A01 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.89 | 81.0 | 6.84e-01 | 100.0% | 64.5% |
| 1pd3A00 | 1.10.287.230 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.88 | 77.0 | 7.43e-01 | 97.9% | 94.4% |
| 3cwzB01 | 1.20.58.900 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain | 0.87 | 78.0 | 5.43e-01 | 100.0% | 32.9% |
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.87 | 78.0 | 6.58e-01 | 100.0% | 62.2% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.86 | 77.0 | 6.59e-01 | 100.0% | 98.7% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.86 | 76.0 | 5.65e-01 | 100.0% | 44.4% |
| 1vq8V00 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 78.0 | 6.94e-01 | 100.0% | 72.3% |
| 4a17U01 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.85 | 77.0 | 6.43e-01 | 100.0% | 61.0% |
| 1fs0G02 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.85 | 75.0 | 6.12e-01 | 100.0% | 71.9% |
| 3n5lA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.85 | 75.0 | 7.05e-01 | 100.0% | 80.7% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.84 | 69.0 | 4.62e-01 | 91.7% | 24.9% |
| 2jdiH02 | 1.20.5.440 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain | 0.84 | 66.0 | 6.95e-01 | 85.4% | 100.0% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.83 | 74.0 | 6.53e-01 | 100.0% | 95.7% |
| 4kzsA02 | 6.10.140.1870 | Special › Helix non-globular › Helix Hairpins › | 0.82 | 73.0 | 6.38e-01 | 100.0% | 67.1% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.82 | 71.0 | 5.67e-01 | 97.9% | 50.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.80 | 69.0 | 6.09e-01 | 100.0% | 66.2% |
| 3i2fA02 | 1.10.3020.10 | Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) | 0.80 | 61.0 | 4.86e-01 | 97.9% | 42.1% |
| 2kwhA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.79 | 69.0 | 6.59e-01 | 100.0% | 85.7% |
| 2kp8A00 | 1.20.5.170 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.77 | 66.0 | 5.86e-01 | 100.0% | 69.4% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.77 | 59.0 | 4.59e-01 | 100.0% | 41.1% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.76 | 64.0 | 5.56e-01 | 100.0% | 98.7% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.76 | 61.0 | 6.01e-01 | 91.7% | 100.0% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.76 | 66.0 | 4.80e-01 | 100.0% | 50.4% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.75 | 57.0 | 4.74e-01 | 81.2% | 60.0% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.74 | 63.0 | 5.71e-01 | 100.0% | 73.5% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.73 | 60.0 | 5.11e-01 | 95.8% | 63.1% |
| 4fxxB01 | 6.10.140.1790 | Special › Helix non-globular › Helix Hairpins › | 0.73 | 67.0 | 5.78e-01 | 100.0% | 73.6% |
| 2mpnA00 | 6.10.140.1340 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 60.0 | 5.51e-01 | 100.0% | 86.8% |
| 2etnB01 | 1.10.287.180 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Transcription elongation factor, GreA/GreB, N-terminal domain | 0.72 | 59.0 | 5.26e-01 | 100.0% | 65.8% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.72 | 62.0 | 4.79e-01 | 100.0% | 44.8% |
| 2hqyA02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.71 | 54.0 | 3.75e-01 | 85.4% | 26.2% |
| 4od8D00 | 6.10.140.1880 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 56.0 | 5.55e-01 | 95.8% | 84.3% |
| 1z0jB00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.70 | 55.0 | 5.50e-01 | 100.0% | 92.2% |
| 2yf4F00 | 1.10.3420.10 | Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain | 0.68 | 55.0 | 4.13e-01 | 100.0% | 33.6% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.68 | 54.0 | 4.05e-01 | 97.9% | 34.1% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 54.0 | 5.19e-01 | 95.8% | 100.0% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 53.0 | 5.18e-01 | 87.5% | 100.0% |
| 2jx4A01 | 6.10.140.460 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 52.0 | 5.26e-01 | 93.8% | 97.9% |
| 1p49A02 | 1.10.287.550 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 50.0 | 4.83e-01 | 100.0% | 88.1% |
| 1rfyB00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.62 | 51.0 | 4.33e-01 | 100.0% | 59.1% |
| 4gzrC00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.61 | 52.0 | 4.90e-01 | 100.0% | 80.3% |
| 2lpeA01 | 6.10.140.1120 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 50.0 | 4.43e-01 | 100.0% | 66.7% |
| 2v40A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.56 | 46.0 | 3.83e-01 | 95.8% | 56.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3840952 | 601.19.1.39 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › LIN9_C | 0.94 | 88.0 | 7.38e-01 | 100.0% | 70.7% |
| 3477418 | 4992.1.1.12 ↗ | extended segments › RelB-like › RelB-like › RelB-like › LIN9_C | 0.94 | 87.0 | 6.77e-01 | 100.0% | 55.8% |
| 3810801 | 632.22.1.139 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th | 0.94 | 88.0 | 5.95e-01 | 100.0% | 38.0% |
| 3655688 | 3755.3.1.303 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF21A_4th | 0.93 | 87.0 | 5.67e-01 | 100.0% | 40.6% |
| 3318812 | 192.8.1.248 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th | 0.93 | 86.0 | 5.86e-01 | 100.0% | 47.3% |
| 3629047 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.93 | 87.0 | 6.59e-01 | 100.0% | 50.0% |
| 3754639 | 150.5.1.106 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › LIN9_C | 0.93 | 85.0 | 6.89e-01 | 100.0% | 62.4% |
| 3888160 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.92 | 81.0 | 8.37e-01 | 93.8% | 100.0% |
| 3337008 | 192.2.1.60 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th | 0.92 | 84.0 | 5.81e-01 | 97.9% | 94.3% |
| 3873779 | 2004.1.1.463 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd | 0.91 | 84.0 | 4.80e-01 | 100.0% | 11.7% |
| 4001635 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.91 | 83.0 | 5.82e-01 | 100.0% | 37.0% |
| 2572867 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.90 | 83.0 | 6.18e-01 | 100.0% | 45.0% |
| 4028290 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.90 | 82.0 | 6.20e-01 | 100.0% | 61.0% |
| 3248423 | 109.42.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › E3 ubiquitin-protein ligase SHPRH first helical domain › E3 ubiquitin-protein ligase SHPRH first helical domain › SHPRH_helical-1st | 0.88 | 79.0 | 5.09e-01 | 100.0% | 24.4% |
| 3382610 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.88 | 78.0 | 4.80e-01 | 100.0% | 18.5% |
| 3965698 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.88 | 79.0 | 4.34e-01 | 100.0% | 21.3% |
| 4359331 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.87 | 80.0 | 7.34e-01 | 100.0% | 83.3% |
| 3493322 | 2006.1.1.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › 5_nucleotid | 0.87 | 73.0 | 4.44e-01 | 100.0% | 16.7% |
| 3585354 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.86 | 65.0 | 5.24e-01 | 81.2% | 73.3% |
| 4572974 | 3922.1.1.79 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › SAP130_C | 0.86 | 76.0 | 5.73e-01 | 100.0% | 63.5% |
| 4944233 | 3718.1.1.0 ↗ | alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT | 0.83 | 71.0 | 6.37e-01 | 100.0% | 71.4% |
| 4939264 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.80 | 69.0 | 6.14e-01 | 100.0% | 68.6% |
| 4036490 | 4082.1.1.0 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain | 0.75 | 61.0 | 4.66e-01 | 97.9% | 37.6% |
| 3706043 | 323.1.1.6 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf | 0.75 | 64.0 | 4.46e-01 | 97.9% | 30.0% |
| 3641527 | 192.8.1.353 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › Med10 | 0.73 | 60.0 | 5.27e-01 | 100.0% | 62.5% |
| 4216245 | 4082.1.1.1 ↗ | alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange | 0.73 | 55.0 | 5.65e-01 | 87.5% | 93.3% |
| 4993799 | 5060.1.1.1 ↗ | alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C › vATP-synt_AC39 | 0.72 | 62.0 | 4.86e-01 | 100.0% | 45.9% |
| 4610474 | 547.1.1.0 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain | 0.72 | 49.0 | 3.06e-01 | 72.9% | 14.7% |
| 3010304 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.71 | 57.0 | 5.59e-01 | 97.9% | 92.7% |
| 3787131 | 524.1.1.8 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 | 0.71 | 61.0 | 4.09e-01 | 97.9% | 87.0% |
| 4474737 | 3711.1.1.44 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › Med11 | 0.69 | 56.0 | 4.76e-01 | 100.0% | 54.4% |
| 3400028 | 3843.1.1.30 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF4781 | 0.69 | 55.0 | 4.78e-01 | 97.9% | 61.2% |
| 4940728 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.69 | 55.0 | 5.50e-01 | 89.6% | 94.0% |
| 3565534 | 4177.1.1.2 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR | 0.69 | 55.0 | 3.62e-01 | 100.0% | 20.0% |
| 3336964 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.67 | 56.0 | 3.59e-01 | 100.0% | 19.6% |
| 3481950 | 206.1.1.70 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 | 0.65 | 56.0 | 3.26e-01 | 100.0% | 15.4% |
D3
medium
residues 440-541
Domain cluster:
rep: AF396866.1__AAK94380.1__X__00046__D305-423
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zm3B01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.71 | 24.0 | 2.18e-01 | 78.4% | 24.6% |
| 3gkuA03 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.63 | 26.0 | 3.09e-01 | 85.3% | 52.1% |
| 2epjA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 26.0 | 2.15e-01 | 75.5% | 22.7% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 47.0 | 4.21e-01 | 95.1% | 95.3% |
| 5x5hA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 26.0 | 2.41e-01 | 83.3% | 35.3% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.54 | 31.0 | 3.06e-01 | 93.1% | 53.2% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.51 | 41.0 | 3.89e-01 | 90.2% | 85.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965414 | 4038.1.1.6 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › P22_portal | 0.67 | 60.0 | 3.93e-01 | 100.0% | 23.3% |
| 5039294 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.64 | 57.0 | 4.18e-01 | 100.0% | 39.3% |
| 5083210 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.63 | 47.0 | 4.62e-01 | 96.1% | 71.8% |
| 4031453 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.62 | 55.0 | 4.14e-01 | 99.0% | 40.8% |
| 3682309 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.61 | 43.0 | 4.59e-01 | 94.1% | 83.3% |
| 4281419 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.57 | 50.0 | 4.51e-01 | 95.1% | 87.0% |
| 4140340 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.57 | 49.0 | 4.31e-01 | 94.1% | 91.3% |
| 4030791 | 4038.1.1.2 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_prot_Gp6 | 0.55 | 47.0 | 3.40e-01 | 99.0% | 56.4% |
| 4118829 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.55 | 48.0 | 4.32e-01 | 95.1% | 93.6% |
| 5036014 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.54 | 46.0 | 4.79e-01 | 95.1% | 98.9% |
| 5023773 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.54 | 45.0 | 3.73e-01 | 89.2% | 62.3% |
| 4447987 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.53 | 48.0 | 2.89e-01 | 100.0% | 17.0% |
| 3838810 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.53 | 44.0 | 3.04e-01 | 92.2% | 76.4% |
| 4973854 | 4044.1.1.0 ↗ | alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins | 0.53 | 39.0 | 3.89e-01 | 93.1% | 74.3% |
| 4416037 | 3747.1.1.1 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod | 0.52 | 44.0 | 4.02e-01 | 93.1% | 99.3% |
| 3387369 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.50 | 45.0 | 4.09e-01 | 95.1% | 93.8% |
| 3281873 | 101.1.9.84 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 | 0.50 | 44.0 | 3.35e-01 | 95.1% | 66.5% |
D4
medium
residues 630-675
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.65 | 49.0 | 3.62e-01 | 84.8% | 57.9% |