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MN988539.1__QIG74583.1__EVC11_001__00001
Bact-VirMN988539.1__QIG74583.1__EVC11_001__00001
Identity
- Accession:
- MN988539 ↗
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Morelosvirus›
Rhizobium_phage_RHph_I20
TaxID: 2509730
Cluster
View cluster (15 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 39-114
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dfzA02 | 1.10.8.610 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › SirC, precorrin-2 dehydrogenase, C-terminal helical domain-like | 0.60 | 41.0 | 4.22e-01 | 78.9% | 73.0% |
| 4c0zA02 | 1.10.150.480 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 45.0 | 4.24e-01 | 82.9% | 95.8% |
| 1lj2A00 | 1.20.5.970 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Nonstructural RNA-binding protein | 0.60 | 41.0 | 3.70e-01 | 71.1% | 54.7% |
| 3ljcA02 | 1.20.58.1480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 48.0 | 4.11e-01 | 100.0% | 55.6% |
| 3f2bA07 | 6.10.140.1510 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 47.0 | 4.57e-01 | 93.4% | 93.0% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 4.00e-01 | 78.9% | 96.5% |
| 1tteA02 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 35.0 | 3.83e-01 | 81.6% | 84.2% |
| 4mtdD01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.90e-01 | 81.6% | 93.2% |
| 3fymA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.53 | 43.0 | 4.30e-01 | 97.4% | 85.4% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.53 | 37.0 | 3.32e-01 | 73.7% | 100.0% |
| 1e1dA02 | 1.20.1270.20 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 39.0 | 3.83e-01 | 81.6% | 77.4% |
| 4gw3A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 43.0 | 3.03e-01 | 96.1% | 81.7% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5021020 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.70 | 56.0 | 5.27e-01 | 84.2% | 78.9% |
| 4940303 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.63 | 46.0 | 4.56e-01 | 100.0% | 75.0% |
| 3533062 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.63 | 49.0 | 4.54e-01 | 82.9% | 83.2% |
| 5017330 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 3.95e-01 | 78.9% | 50.4% |
| 5046448 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.59 | 43.0 | 4.70e-01 | 98.7% | 100.0% |
| 3467310 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.58 | 37.0 | 4.03e-01 | 77.6% | 83.1% |
| 3266150 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.57 | 51.0 | 4.18e-01 | 100.0% | 71.4% |
| 3459161 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.57 | 38.0 | 3.39e-01 | 76.3% | 46.4% |
| 3781388 | 605.4.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein | 0.57 | 43.0 | 4.36e-01 | 81.6% | 88.0% |
| 4505043 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.56 | 41.0 | 3.44e-01 | 80.3% | 69.7% |
| 3907838 | 109.4.1.576 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exportin-5 | 0.56 | 38.0 | 3.13e-01 | 71.1% | 70.0% |
| 3663702 | 143.1.1.5 ↗ | alpha arrays › PABP domain-like › PABC(PABP) domain › PABC(PABP) domain › VIN3_C | 0.53 | 38.0 | 3.93e-01 | 81.6% | 84.3% |
| 4966173 | 101.1.4.97 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › DrmE_C | 0.53 | 44.0 | 3.86e-01 | 96.1% | 59.2% |
| 3974749 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 36.0 | 3.56e-01 | 71.1% | 84.3% |
| 3240810 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.51 | 38.0 | 3.22e-01 | 81.6% | 75.0% |
| 1284299 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.51 | 37.0 | 3.08e-01 | 81.6% | 58.7% |
| 3919392 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.51 | 41.0 | 3.59e-01 | 89.5% | 75.0% |