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MN988539.1__QIG74585.1__EVC11_003__00003
Bact-VirMN988539.1__QIG74585.1__EVC11_003__00003
Identity
- Accession:
- MN988539 ↗
- Kingdom:
- phage
Quality
81.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Morelosvirus›
Rhizobium_phage_RHph_I20
TaxID: 2509730
Cluster
View cluster (14 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-60_129-181
Domain cluster:
rep: KY065149.1__APD18159.1__X__00035__D3-48_122-171
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.63 | 44.0 | 3.87e-01 | 72.3% | 49.7% |
| 2iu5B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.61 | 44.0 | 3.69e-01 | 75.2% | 46.3% |
| 1hlbA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 42.0 | 3.61e-01 | 70.3% | 54.1% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.59 | 44.0 | 2.97e-01 | 78.2% | 98.0% |
| 3ni7A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 43.0 | 3.65e-01 | 93.1% | 46.6% |
| 3q1xA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.55 | 46.0 | 4.18e-01 | 93.1% | 88.5% |
| 1s7bA00 | 1.10.3730.20 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › | 0.55 | 39.0 | 3.90e-01 | 90.1% | 70.8% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 39.0 | 4.39e-01 | 92.1% | 98.7% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 43.0 | 3.82e-01 | 85.1% | 86.6% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 37.0 | 4.25e-01 | 96.0% | 95.9% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 47.0 | 4.14e-01 | 97.0% | 90.6% |
| 4kw3A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.54 | 46.0 | 3.50e-01 | 99.0% | 60.2% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 41.0 | 3.64e-01 | 81.2% | 85.6% |
| 1ngkB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 37.0 | 3.48e-01 | 84.2% | 57.5% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 43.0 | 3.90e-01 | 91.1% | 92.4% |
| 4akgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.53 | 46.0 | 4.04e-01 | 98.0% | 92.3% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.53 | 43.0 | 3.50e-01 | 88.1% | 58.8% |
| 2hkuB00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 42.0 | 3.46e-01 | 88.1% | 47.0% |
| 1oj6A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.65e-01 | 85.1% | 62.6% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.71e-01 | 85.1% | 87.2% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 41.0 | 3.67e-01 | 84.2% | 85.8% |
| 3gw4A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.52 | 38.0 | 3.09e-01 | 95.0% | 40.6% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 44.0 | 3.86e-01 | 95.0% | 90.9% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 43.0 | 4.16e-01 | 92.1% | 95.6% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.51 | 39.0 | 3.19e-01 | 84.2% | 98.0% |
| 4me9B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 43.0 | 3.59e-01 | 95.0% | 69.4% |
| 6bmeA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 43.0 | 4.04e-01 | 96.0% | 98.4% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 44.0 | 4.05e-01 | 99.0% | 81.2% |
| 3akaA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.50 | 40.0 | 3.47e-01 | 86.1% | 61.7% |
| 2oifB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 34.0 | 3.09e-01 | 70.3% | 59.6% |
| 6ko8A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.50 | 40.0 | 3.33e-01 | 86.1% | 88.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3062928 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.91 | 87.0 | 6.76e-01 | 100.0% | 84.7% |
| 4873531 | 4275.1.1.6 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube | 0.90 | 86.0 | 6.85e-01 | 100.0% | 90.5% |
| 3090881 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.87 | 82.0 | 6.36e-01 | 100.0% | 84.3% |
| 5055207 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.72 | 56.0 | 6.02e-01 | 88.1% | 97.6% |
| 5082459 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.67 | 58.0 | 5.88e-01 | 95.0% | 96.0% |
| 3653618 | 5069.1.3.69 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ETR1_N | 0.65 | 44.0 | 4.61e-01 | 70.3% | 86.3% |
| 4934670 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.64 | 43.0 | 4.77e-01 | 70.3% | 97.5% |
| 3564576 | 106.1.1.8 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › HisK-N-like | 0.63 | 42.0 | 3.72e-01 | 72.3% | 45.3% |
| 3700592 | 193.1.1.0 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like | 0.62 | 34.0 | 3.55e-01 | 92.1% | 56.8% |
| 4992348 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.61 | 37.0 | 2.78e-01 | 96.0% | 24.9% |
| 3587011 | 604.39.1.23 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Hpre_diP_synt_I | 0.59 | 50.0 | 4.18e-01 | 93.1% | 73.7% |
| 3291430 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.59 | 43.0 | 3.97e-01 | 89.1% | 57.1% |
| 4997044 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.58 | 37.0 | 3.72e-01 | 88.1% | 61.9% |
| 3976610 | 162.1.1.1 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD | 0.57 | 39.0 | 3.96e-01 | 71.3% | 100.0% |
| 3287092 | 604.39.1.9 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Vut_1 | 0.55 | 44.0 | 3.53e-01 | 89.1% | 86.5% |
| 3290011 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.54 | 40.0 | 4.14e-01 | 90.1% | 83.2% |
| 3405086 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 45.0 | 3.67e-01 | 90.1% | 78.4% |
| 2796200 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.54 | 42.0 | 3.72e-01 | 84.2% | 85.0% |
| 5019616 | 5069.1.1.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ferric_reduct | 0.53 | 48.0 | 3.99e-01 | 100.0% | 62.2% |
| 5082813 | 3813.1.1.2 ↗ | alpha bundles › DUF416 › DUF416 › DUF416 › Imm5_like | 0.53 | 44.0 | 4.01e-01 | 95.0% | 79.3% |
| 4272313 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.53 | 40.0 | 3.64e-01 | 82.2% | 84.6% |
| 3284 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.52 | 41.0 | 3.71e-01 | 85.1% | 87.2% |
| 3527720 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.51 | 45.0 | 3.38e-01 | 100.0% | 51.9% |
| 5008560 | 4995.1.1.1 ↗ | alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 | 0.50 | 37.0 | 3.72e-01 | 98.0% | 76.2% |
D2
high
residues 65-126
Domain cluster:
rep: KM199771.1__AIK68521.1__Lo5R7ANS_51__00051__D57-121
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l4yA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 45.0 | 3.93e-01 | 98.4% | 55.1% |
| 2vbkA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 50.0 | 2.96e-01 | 100.0% | 13.5% |
| 2i6tA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.57 | 39.0 | 3.01e-01 | 71.0% | 44.1% |
| 1rxlA00 | 2.60.40.1570 | Mainly Beta › Sandwich › Immunoglobulin-like › Dr adhesin | 0.57 | 49.0 | 3.80e-01 | 98.4% | 76.9% |
| 1tvcA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 47.0 | 4.02e-01 | 100.0% | 89.9% |
| 3lnnA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.56 | 47.0 | 4.25e-01 | 100.0% | 97.8% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.54 | 44.0 | 3.28e-01 | 98.4% | 87.6% |
| 7sz8A01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.54 | 45.0 | 3.97e-01 | 98.4% | 76.8% |
| 2di7A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 43.0 | 3.77e-01 | 96.8% | 78.5% |
| 1byoA00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.53 | 44.0 | 3.93e-01 | 100.0% | 79.8% |
| 6ijfC01 | 3.90.1720.80 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › | 0.53 | 44.0 | 4.01e-01 | 100.0% | 66.7% |
| 4aefA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 3.69e-01 | 93.5% | 70.9% |
| 2fsdA00 | 2.60.40.2460 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain | 0.51 | 42.0 | 3.67e-01 | 100.0% | 70.0% |
| 4owkE00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 39.0 | 3.13e-01 | 85.5% | 83.8% |
| 2bv2A00 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.50 | 41.0 | 3.81e-01 | 96.8% | 97.6% |
| 2vhlA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.50 | 39.0 | 2.58e-01 | 88.7% | 82.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3090881 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.89 | 81.0 | 5.50e-01 | 100.0% | 30.8% |
| 4873531 | 4275.1.1.6 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube | 0.88 | 75.0 | 5.26e-01 | 100.0% | 31.8% |
| 4829264 | 4275.1.1.6 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube | 0.83 | 75.0 | 5.26e-01 | 100.0% | 36.2% |
| 4843675 | 4275.1.1.6 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube | 0.82 | 70.0 | 5.27e-01 | 100.0% | 39.7% |
| 3062928 | 4275.1.1.0 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like | 0.78 | 67.0 | 4.65e-01 | 100.0% | 30.1% |
| 2722164 | 4275.1.1.6 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Tube | 0.76 | 66.0 | 4.60e-01 | 100.0% | 30.8% |
| 3722906 | 10.32.1.197 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › But2 | 0.54 | 45.0 | 3.44e-01 | 100.0% | 66.9% |
| 3488755 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 43.0 | 3.99e-01 | 93.5% | 92.9% |
| 5079674 | 11.21.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein | 0.54 | 45.0 | 4.29e-01 | 98.4% | 93.3% |
| 158372 | 72.1.1.1 ↗ | beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › Crystall | 0.50 | 41.0 | 3.81e-01 | 96.8% | 97.6% |