←Back to structures

MN988539.1__QIG74589.1__EVC11_007__00007

Bact-Vir

MN988539.1__QIG74589.1__EVC11_007__00007

Identity

Accession:
MN988539 ↗
Kingdom:
phage

Quality

72.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Morelosvirus› Rhizobium_phage_RHph_I20

TaxID: 2509730

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-187
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.66 53.0 4.52e-01 85.1% 71.5%
2hxoA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.59 42.0 3.94e-01 86.0% 61.1%
1fx8A00 1.20.1080.10 Mainly Alpha › Up-down Bundle › Glycerol uptake facilitator protein › Glycerol uptake facilitator protein. 0.59 48.0 3.84e-01 89.3% 84.3%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.58 44.0 4.28e-01 78.5% 94.7%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.57 41.0 4.71e-01 95.9% 100.0%
1hqoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 41.0 3.98e-01 72.7% 70.2%
1wp9B03 1.20.1320.20 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain 0.57 46.0 4.57e-01 91.7% 82.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.56 44.0 4.48e-01 81.8% 93.2%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.55 45.0 4.49e-01 90.9% 94.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.54 42.0 4.32e-01 83.5% 86.2%
3rh3A01 1.20.120.930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF12889, N-terminal DUF3829 0.54 34.0 3.36e-01 81.0% 58.6%
4ivfA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.53 37.0 3.76e-01 72.7% 73.3%
3zheB02 1.20.190.60 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 0.53 42.0 3.72e-01 85.1% 56.9%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.53 38.0 3.04e-01 73.6% 90.5%
4u72A01 1.20.58.480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 41.0 3.42e-01 83.5% 75.7%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 43.0 4.11e-01 88.4% 91.7%
2hxiB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 41.0 3.98e-01 81.8% 79.9%
4dmvA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 35.0 4.09e-01 82.6% 97.6%
5cwhA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 39.0 3.59e-01 85.1% 62.2%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 38.0 3.40e-01 78.5% 76.3%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5046162 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.77 58.0 5.04e-01 78.5% 86.1%
5053009 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.75 58.0 5.05e-01 81.8% 80.6%
4946748 1075.1.2.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain 0.74 57.0 4.96e-01 81.0% 87.2%
5014274 1075.1.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain 0.73 54.0 4.55e-01 76.9% 73.0%
5046567 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.73 56.0 4.94e-01 81.8% 85.0%
5079114 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.72 55.0 4.81e-01 81.0% 90.6%
5077137 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.67 53.0 4.98e-01 83.5% 91.0%
3515022 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.62 45.0 3.89e-01 73.6% 50.6%
3989298 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.58 42.0 3.87e-01 100.0% 57.0%
3597250 3843.1.1.0 ↗ alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K 0.57 36.0 3.49e-01 74.4% 57.1%
3216047 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.56 45.0 3.76e-01 86.0% 72.1%
3675860 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.55 42.0 3.67e-01 80.2% 84.3%
4045134 601.4.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › 4HB_MCP_1 0.55 39.0 3.87e-01 82.6% 68.5%
3964217 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.55 49.0 3.87e-01 99.2% 66.7%
5034794 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.54 40.0 3.31e-01 76.0% 88.8%
3822457 5069.1.3.0 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.54 40.0 3.61e-01 76.9% 82.5%
3485270 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 47.0 3.65e-01 99.2% 60.4%
3570953 5001.1.1.9 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › TAS2R 0.53 42.0 3.22e-01 86.8% 80.6%
3332048 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.52 33.0 3.42e-01 78.5% 67.3%
4974664 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.52 37.0 3.76e-01 93.4% 75.8%
3314808 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 4.09e-01 93.4% 86.0%
5050124 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.51 41.0 3.66e-01 85.1% 92.4%
3504179 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.51 39.0 3.92e-01 86.0% 80.0%
4950911 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.51 35.0 3.31e-01 85.1% 57.9%
3719589 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 43.0 2.78e-01 94.2% 27.2%
3498285 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.50 36.0 3.48e-01 74.4% 70.7%
5056276 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.50 41.0 3.80e-01 89.3% 100.0%
3292478 633.4.1.1 ↗ alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI 0.50 40.0 3.65e-01 87.6% 68.2%
4969221 109.4.1.198 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.50 42.0 3.15e-01 91.7% 44.2%
3824987 109.4.1.44 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps35 0.50 43.0 3.27e-01 97.5% 80.0%
D2 high residues 191-292
PDB
Domain cluster: rep: OQ729742.1__WJJ57766.1__MidiMira_39__00039__D178-278
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ztaA00 1.10.490.130 Mainly Alpha › Orthogonal Bundle › Globin-like › 0.72 53.0 4.83e-01 78.4% 71.9%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.70 49.0 5.65e-01 82.4% 100.0%
1vdyA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 57.0 5.17e-01 100.0% 70.7%
4ks9A01 1.20.140.90 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain 0.65 53.0 4.99e-01 89.2% 91.3%
1vkeB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.65 45.0 4.59e-01 76.5% 73.3%
2ggfA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.64 54.0 4.95e-01 94.1% 70.1%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 48.0 4.27e-01 82.4% 88.6%
2wwxB00 1.20.1260.70 Mainly Alpha › Up-down Bundle › Ferritin › 0.62 55.0 4.37e-01 96.1% 58.0%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 55.0 4.07e-01 100.0% 49.1%
2fd5A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 46.0 4.25e-01 79.4% 82.6%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.61 47.0 4.33e-01 82.4% 94.1%
5c5sB00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.60 53.0 4.31e-01 100.0% 90.6%
3wozB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 51.0 3.98e-01 96.1% 46.3%
2ovjA00 1.10.555.10 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase; Chain A › Rho GTPase activation protein 0.59 50.0 4.01e-01 92.2% 82.6%
2uubT00 1.20.58.110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 0.59 44.0 4.49e-01 82.4% 81.8%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.59 40.0 4.08e-01 84.3% 71.0%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.57 36.0 3.85e-01 95.1% 73.0%
1s2xA00 1.20.190.30 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › CAG pathogenicity island protein, CagZ 0.57 44.0 3.70e-01 83.3% 76.1%
3lwjA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 49.0 4.07e-01 100.0% 89.6%
7fhyB01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.56 49.0 3.61e-01 99.0% 90.7%
4hwhE00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 39.0 4.13e-01 72.5% 92.0%
7powA01 1.20.120.1760 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain 0.55 43.0 3.54e-01 86.3% 72.7%
3gs3A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.55 47.0 3.61e-01 100.0% 39.8%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.54 37.0 4.07e-01 91.2% 88.0%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 35.0 4.00e-01 78.4% 93.2%
1kt1A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 4.01e-01 96.1% 78.5%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.53 40.0 4.15e-01 82.4% 94.9%
1elwA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 40.0 3.83e-01 93.1% 69.2%
5djsA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 4.18e-01 98.0% 77.6%
7nmqA01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 48.0 3.26e-01 100.0% 36.9%
4aifA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 46.0 4.14e-01 100.0% 89.6%
2ii2A04 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.52 38.0 4.10e-01 81.4% 98.7%
1tjcA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 41.0 4.22e-01 100.0% 96.8%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.51 38.0 3.67e-01 91.2% 68.9%
2j9qB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 42.0 3.19e-01 95.1% 65.4%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 43.0 4.33e-01 93.1% 94.1%
3agtA00 1.20.120.50 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like 0.50 40.0 3.67e-01 84.3% 69.2%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.50 38.0 3.38e-01 79.4% 86.9%
6fdpA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.50 42.0 3.99e-01 91.2% 90.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975359 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.67 48.0 5.20e-01 74.5% 96.5%
3467575 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.66 59.0 4.80e-01 98.0% 57.4%
3425085 109.4.1.95 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.66 37.0 3.34e-01 72.5% 40.7%
3784906 109.4.1.119 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TRF 0.65 46.0 3.50e-01 73.5% 38.4%
3370927 109.4.1.935 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TOR1L1_N 0.65 55.0 3.72e-01 95.1% 28.6%
3200400 109.4.1.1856 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD_2nd 0.65 54.0 3.28e-01 93.1% 16.2%
3808219 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.63 56.0 4.77e-01 99.0% 62.4%
3643952 109.4.1.22 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N 0.63 50.0 4.41e-01 96.1% 57.4%
5046841 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.61 45.0 3.71e-01 77.5% 93.6%
4979301 109.4.1.218 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP 0.60 46.0 3.87e-01 83.3% 50.6%
3303572 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 50.0 4.49e-01 100.0% 64.7%
3900498 109.4.1.2893 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FANCI_S1-cap, FANCI_S1 0.59 51.0 4.31e-01 95.1% 60.0%
3368627 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 51.0 3.62e-01 98.0% 35.1%
3690358 109.6.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N 0.58 51.0 3.40e-01 99.0% 34.8%
4964888 601.18.1.32 ↗ alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PF26403 0.58 39.0 4.31e-01 78.4% 87.3%
3834069 109.4.1.81 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF-3c_N 0.58 49.0 3.40e-01 94.1% 27.8%
3506443 109.4.1.1197 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TNPO3_IPO13_4th 0.58 48.0 3.55e-01 93.1% 33.6%
2582320 603.4.1.1 ↗ alpha bundles › STAT-like › Cag-Z › Cag-Z › CagZ 0.58 44.0 3.61e-01 83.3% 69.0%
2140320 109.4.1.1259 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.57 46.0 3.98e-01 90.2% 54.7%
4996375 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.57 34.0 2.98e-01 100.0% 36.4%
3764760 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 46.0 4.64e-01 97.1% 88.6%
5026738 109.10.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin 0.56 49.0 4.35e-01 100.0% 72.7%
3670051 109.4.1.1361 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 0.54 44.0 3.45e-01 92.2% 39.6%
4928287 601.4.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.54 41.0 4.24e-01 94.1% 85.3%
3400367 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 4.21e-01 99.0% 85.3%
3562862 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 3.61e-01 99.0% 56.8%
4547690 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.54 46.0 3.41e-01 94.1% 45.9%
5050395 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.53 38.0 4.17e-01 85.3% 91.6%
3682372 109.4.1.1361 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CAND1 0.53 44.0 3.77e-01 94.1% 61.1%
3963201 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 46.0 4.07e-01 97.1% 68.7%
3909243 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.52 45.0 3.01e-01 99.0% 38.7%
3330492 109.4.1.1323 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IMB1 0.51 44.0 3.20e-01 100.0% 47.5%
5065510 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.51 35.0 2.97e-01 71.6% 61.1%
5050917 601.28.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like 0.51 36.0 3.95e-01 84.3% 93.8%
4547107 109.4.1.228 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Exo84_C 0.51 43.0 3.60e-01 97.1% 52.1%
4028216 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 43.0 3.44e-01 100.0% 61.7%
D3 medium residues 331-432
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.76 46.0 4.13e-01 71.6% 44.0%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 42.0 4.79e-01 84.3% 76.3%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.71 55.0 5.32e-01 83.3% 100.0%
4mh6A00 1.10.287.1700 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 55.0 4.67e-01 88.2% 83.0%
2ynqB00 1.25.40.680 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain 0.58 37.0 3.28e-01 74.5% 43.0%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 37.0 3.39e-01 83.3% 47.9%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.57 39.0 4.26e-01 73.5% 92.4%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 45.0 4.51e-01 87.3% 100.0%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.56 41.0 3.93e-01 76.5% 72.0%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.56 33.0 3.18e-01 72.5% 50.0%
1st6A04 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 39.0 3.75e-01 75.5% 76.9%
4dloB02 1.25.40.610 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 38.0 3.70e-01 77.5% 100.0%
1hciA03 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 41.0 3.92e-01 90.2% 99.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3599032 4177.1.1.0 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.72 55.0 4.16e-01 80.4% 56.1%
3883526 4177.1.1.1 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.68 55.0 3.89e-01 86.3% 73.0%
5060018 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.66 45.0 4.21e-01 78.4% 56.8%
4997925 3758.1.1.114 ↗ alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › CA109-like 0.66 52.0 3.96e-01 84.3% 42.9%
3671313 109.26.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › ELYS 0.65 45.0 3.25e-01 71.6% 27.5%
3485270 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 48.0 3.49e-01 78.4% 44.7%
4943371 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.63 40.0 4.59e-01 70.6% 92.9%
3734403 1065.1.1.1 ↗ alpha bundles › SPX domain › SPX domain › SPX domain › SPX 0.62 50.0 4.09e-01 86.3% 49.7%
3450858 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 52.0 4.87e-01 95.1% 98.5%
3931763 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 4.04e-01 73.5% 61.7%
3400711 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.57 49.0 3.53e-01 98.0% 49.1%
3659886 603.1.1.119 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF4220 0.56 44.0 3.54e-01 85.3% 96.7%
4032384 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.54 37.0 4.09e-01 74.5% 93.8%
3864815 192.17.1.0 ↗ alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.50 37.0 3.68e-01 76.5% 79.6%
D4 medium residues 433-522
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ph0C00 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.75 44.0 5.46e-01 76.7% 100.0%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.75 45.0 4.56e-01 74.4% 60.4%
1jvmB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.73 43.0 4.22e-01 74.4% 54.0%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.69 48.0 4.40e-01 73.3% 84.9%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.67 48.0 4.39e-01 74.4% 80.5%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.66 48.0 4.22e-01 75.6% 92.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 34.0 3.22e-01 100.0% 40.9%
4uqxA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.66 46.0 4.68e-01 92.2% 74.2%
1y6xA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 37.0 3.81e-01 98.9% 57.5%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.65 46.0 4.31e-01 74.4% 95.5%
3edvB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 46.0 4.00e-01 75.6% 76.5%
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.61 43.0 3.67e-01 73.3% 58.1%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.61 51.0 4.80e-01 94.4% 98.2%
3pe0A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 47.0 4.50e-01 84.4% 97.2%
4leuA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 51.0 4.03e-01 95.6% 55.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 40.0 4.40e-01 72.2% 100.0%
3a7mA01 1.20.58.380 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Flagellar protein flit. 0.58 41.0 3.89e-01 75.6% 79.1%
8h72B01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 40.0 2.80e-01 75.6% 41.2%
7dl9B02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 47.0 3.65e-01 93.3% 61.1%
2wyhB04 1.20.1270.50 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain 0.55 40.0 3.89e-01 76.7% 92.1%
1ux5A03 1.20.58.2220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Formin, FH2 domain 0.55 46.0 3.42e-01 93.3% 77.8%
2di3B02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.54 44.0 3.70e-01 87.8% 85.2%
2oexA02 1.20.140.50 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › alix/aip1 like domains 0.53 38.0 2.96e-01 75.6% 84.8%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946576 5086.1.1.66 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › GNVR 0.70 37.0 3.21e-01 100.0% 34.8%
3596019 109.46.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) 0.70 57.0 5.04e-01 88.9% 62.4%
5065558 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.66 58.0 4.53e-01 100.0% 49.0%
4998847 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.65 47.0 3.62e-01 75.6% 79.5%
3902164 604.1.1.1 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.64 45.0 4.11e-01 75.6% 83.2%
5038736 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.63 45.0 4.44e-01 74.4% 100.0%
4010267 192.8.1.131 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › GNVR 0.63 38.0 3.41e-01 100.0% 41.5%
3793986 604.7.1.7 ↗ alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › Mitofilin 0.62 45.0 3.99e-01 76.7% 94.8%
5030728 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 44.0 3.79e-01 74.4% 65.7%
3168656 604.5.1.64 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › EMC4 0.61 44.0 4.21e-01 76.7% 88.2%
3724837 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.61 49.0 3.59e-01 86.7% 50.4%
4600416 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.61 50.0 3.79e-01 87.8% 61.2%
3868 4204.1.1.1 ↗ alpha bundles › AF0941-like › AF0941-like › AF0941-like › AF0941-like 0.61 51.0 4.83e-01 94.4% 100.0%
3390124 5050.1.1.9 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.60 49.0 3.64e-01 90.0% 53.6%
1019363 604.5.1.2 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.59 42.0 3.89e-01 73.3% 80.7%
4977043 5051.1.1.10 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 0.59 46.0 3.07e-01 85.6% 67.3%
3927159 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.57 43.0 3.75e-01 80.0% 80.7%
4944765 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 42.0 2.73e-01 83.3% 82.3%
3291586 3627.1.1.1 ↗ alpha bundles › UDP-galactofuranosyl transferase GlfT2 helical domain › UDP-galactofuranosyl transferase GlfT2 helical domain › UDP-galactofuranosyl transferase GlfT2 helical domain › GlfT2_domain3 0.55 49.0 3.72e-01 97.8% 62.9%
3410499 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.55 46.0 3.36e-01 91.1% 62.4%
3423910 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.54 47.0 4.25e-01 100.0% 90.0%
4151791 601.1.1.43 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Serendipity_A 0.53 41.0 3.58e-01 83.3% 65.7%
5075952 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.53 42.0 3.78e-01 87.8% 71.1%
4027330 3567.1.1.0 ↗ a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.50 36.0 3.21e-01 75.6% 56.2%
5057229 371.1.1.0 ↗ few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.50 41.0 3.77e-01 100.0% 66.7%
D5 medium residues 523-581
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4q5qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.77 46.0 3.74e-01 91.5% 34.3%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 56.0 5.34e-01 84.7% 77.9%
5ctrA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.71 59.0 3.75e-01 94.9% 19.7%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.70 53.0 4.78e-01 83.1% 85.5%
8j50A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 54.0 3.42e-01 91.5% 16.7%
2pmrA00 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.67 47.0 4.34e-01 74.6% 56.6%
2vf8B02 1.20.1580.10 Mainly Alpha › Up-down Bundle › ABC transporter ATPase like fold › ABC transporter ATPase like domain 0.66 53.0 3.93e-01 89.8% 77.4%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 49.0 3.49e-01 84.7% 93.0%
2p0vA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 56.0 3.37e-01 100.0% 28.0%
4l7aA00 3.40.390.70 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › 0.64 50.0 3.29e-01 88.1% 26.4%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.63 44.0 4.25e-01 76.3% 74.3%
1zvwA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 40.0 3.95e-01 76.3% 75.8%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.57 43.0 3.19e-01 84.7% 92.0%
3jr1A02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.56 44.0 3.15e-01 89.8% 66.0%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 50.0 4.15e-01 98.3% 66.7%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 38.0 3.77e-01 83.1% 75.0%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839496 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 58.0 3.99e-01 79.7% 48.0%
4022360 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.78 63.0 3.88e-01 88.1% 17.1%
4972840 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.72 57.0 3.88e-01 86.4% 82.0%
5074233 620.1.1.2 ↗ alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.71 53.0 3.83e-01 78.0% 70.3%
3611631 3559.1.1.0 ↗ a+b complex topology › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 › Mediator of RNA polymerase II transcription subunit 22 0.71 55.0 4.35e-01 81.4% 47.0%
3355429 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.69 50.0 4.88e-01 78.0% 75.4%
4956327 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.69 50.0 3.60e-01 79.7% 91.7%
4970389 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 50.0 3.78e-01 78.0% 32.9%
5011873 4156.1.1.6 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc 0.66 55.0 3.99e-01 93.2% 52.1%
4441096 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.65 51.0 5.17e-01 94.9% 88.3%
3661847 109.4.1.1293 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1 0.64 46.0 3.22e-01 78.0% 36.7%
4392311 101.35.1.1 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.64 45.0 4.97e-01 72.9% 95.6%
3589078 191.1.1.63 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_N 0.63 53.0 3.64e-01 91.5% 38.9%
4374689 601.7.1.40 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C 0.62 51.0 2.89e-01 86.4% 9.0%
3280612 564.1.1.2 ↗ alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › zf-HC2 0.58 48.0 4.63e-01 98.3% 84.3%
3088236 176.1.1.0 ↗ alpha arrays › Annexin › Annexin › Annexin 0.55 39.0 3.47e-01 74.6% 60.5%
D6 medium residues 582-690
PDB
Domain cluster: rep: OR367448.1__WEM05538.1__HIBIKMCM_00048__00047__D357-435
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.76 37.0 4.20e-01 71.6% 60.5%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.69 40.0 4.60e-01 72.5% 79.5%
5umbA02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.64 30.0 3.50e-01 87.2% 61.3%
5xtck00 1.10.287.3510 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 36.0 3.87e-01 84.4% 64.9%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.60 44.0 3.94e-01 74.3% 68.8%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 34.0 4.09e-01 80.7% 88.7%
7v7yA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.56 45.0 3.33e-01 86.2% 71.4%
3bujA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 40.0 2.80e-01 75.2% 75.3%
1jadA00 1.20.1230.10 Mainly Alpha › Up-down Bundle › Phospholipase C Beta; Chain: A › Phospholipase C beta, distal C-terminal domain 0.56 39.0 3.03e-01 72.5% 79.3%
1h0oA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 45.0 3.32e-01 87.2% 44.4%
3wi3B00 1.20.58.2130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 46.0 3.71e-01 89.9% 94.3%
4dwlA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 36.0 3.62e-01 78.9% 64.8%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.55 33.0 3.53e-01 72.5% 66.3%
5ljvA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.67e-01 81.7% 85.3%
2hytA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 46.0 3.83e-01 91.7% 60.1%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.53 37.0 3.46e-01 81.7% 58.5%
2a2fX02 1.20.58.670 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D 0.52 44.0 4.17e-01 90.8% 89.9%
7qpgW01 1.10.357.150 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.52 42.0 3.53e-01 88.1% 82.1%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 41.0 3.47e-01 86.2% 79.5%
1yfmA02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.51 39.0 2.95e-01 79.8% 42.8%
4g12A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 40.0 3.66e-01 84.4% 75.2%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.50 41.0 3.86e-01 89.0% 85.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3173292 7111.1.1.1 ↗ alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap 0.69 55.0 4.43e-01 84.4% 60.0%
4913800 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.65 41.0 4.67e-01 73.4% 87.3%
4826575 150.1.1.5 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › DUF305 0.58 30.0 3.93e-01 82.6% 87.7%
3215006 109.4.1.602 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Dor1 0.58 50.0 3.29e-01 96.3% 35.2%
4191047 2484.1.1.245 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.56 48.0 3.34e-01 96.3% 87.3%
3164004 2484.1.1.245 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › SHS2_FTSA, PilM_2, FtsA 0.55 41.0 2.79e-01 78.0% 27.7%
3183972 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.55 46.0 3.82e-01 93.6% 73.0%
3411902 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.53 47.0 3.66e-01 100.0% 75.6%
4106383 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.53 41.0 3.68e-01 84.4% 80.0%
3909630 601.48.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.52 34.0 3.93e-01 88.1% 96.0%
4141047 593.1.1.0 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like 0.51 41.0 3.24e-01 90.8% 88.5%
4933731 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.51 44.0 2.94e-01 96.3% 71.9%
3174487 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.51 41.0 2.98e-01 90.8% 91.5%
3215609 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.51 44.0 3.23e-01 94.5% 86.3%
D7 medium residues 831-954
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ybxA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.71 27.0 3.13e-01 75.8% 46.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962103 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.74 35.0 3.84e-01 81.5% 54.3%
4139864 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.74 32.0 3.59e-01 83.9% 51.0%
4498285 245.2.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB › YbaB_DNA_bd 0.72 28.0 3.21e-01 79.8% 46.3%
3970048 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.66 42.0 5.06e-01 72.6% 100.0%
4386701 310.2.1.35 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 0.63 36.0 3.46e-01 82.3% 48.3%
5031247 3755.3.1.127 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › NFACT_N 0.51 41.0 3.68e-01 86.3% 70.0%
3228638 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.50 44.0 3.19e-01 96.8% 86.1%
5079456 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.50 40.0 3.56e-01 86.3% 77.8%