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MN988541.1__QIG74925.1__EVC13_004__00004

Bact-Vir

MN988541.1__QIG74925.1__EVC13_004__00004

Identity

Accession:
MN988541 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_I65

TaxID: 2509738

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-74
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iibA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.66 50.0 3.25e-01 80.0% 92.5%
6ks6a01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.56 49.0 3.33e-01 100.0% 79.4%
3w7tA03 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 48.0 2.96e-01 97.1% 63.0%
1zatA01 3.10.20.800 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 38.0 3.16e-01 77.1% 53.6%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 30.0 2.82e-01 71.4% 45.6%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.50 41.0 2.92e-01 92.9% 73.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3664519 5051.1.1.6 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans 0.66 48.0 2.93e-01 77.1% 16.1%
3003102 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.61 44.0 3.58e-01 75.7% 43.3%
3175297 206.1.1.2 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase,Pkinase_C 0.59 47.0 2.99e-01 88.6% 34.3%
5038289 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 2.94e-01 78.6% 39.3%