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MN988541.1__QIG74934.1__EVC13_013__00013

Bact-Vir

MN988541.1__QIG74934.1__EVC13_013__00013

Identity

Accession:
MN988541 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_I65

TaxID: 2509738

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-75
PDB
Domain cluster: rep: MW273922.1__QPZ53454.1__HTVC034P_gp20__00020__D68-159
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08299.18 best Bac_DnaA_C 45.8 7.00e-12 90.7% 95.7%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.92 85.0 7.75e-01 97.3% 78.7%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 54.0 6.26e-01 93.3% 88.9%
3onqA03 1.10.10.2840 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain 0.80 49.0 4.01e-01 85.3% 35.9%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 48.0 5.41e-01 80.0% 80.4%
1r71A01 1.10.10.730 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › KorB DNA-binding domain 0.77 55.0 6.18e-01 92.0% 100.0%
1a9xA04 1.10.1030.10 Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain 0.68 47.0 3.77e-01 98.7% 36.0%
1g2hA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.68 49.0 5.36e-01 77.3% 96.7%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 54.0 4.07e-01 92.0% 75.8%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 45.0 4.05e-01 78.7% 52.9%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.63 42.0 4.17e-01 81.3% 65.8%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.64e-01 100.0% 73.3%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 53.0 3.84e-01 93.3% 59.2%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 3.61e-01 74.7% 79.5%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.62 48.0 3.72e-01 84.0% 96.0%
4nvsA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 45.0 3.53e-01 76.0% 51.0%
3r72A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.61 53.0 4.48e-01 94.7% 82.0%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 41.0 4.16e-01 70.7% 72.0%
2jqqA00 1.20.58.1240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 49.0 3.93e-01 90.7% 98.1%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 51.0 4.18e-01 93.3% 88.7%
8ai9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 43.0 3.95e-01 80.0% 83.7%
4ivnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.93e-01 80.0% 69.7%
3h4cA02 1.10.472.110 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › 0.57 50.0 4.41e-01 98.7% 75.5%
2erbA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.57 48.0 4.31e-01 96.0% 86.9%
7l1iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.21e-01 74.7% 77.8%
4pt1B00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 47.0 4.05e-01 98.7% 72.7%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 4.25e-01 86.7% 77.8%
1z1vA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 35.0 3.64e-01 80.0% 68.6%
5d0yA00 1.10.1760.20 Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › 0.55 48.0 3.84e-01 100.0% 92.3%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 48.0 4.30e-01 100.0% 70.8%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 48.0 4.31e-01 100.0% 75.7%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.79e-01 77.3% 85.4%
1cnt200 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 39.0 3.31e-01 78.7% 69.2%
1iygA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 41.0 3.48e-01 100.0% 48.1%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 46.0 4.18e-01 100.0% 87.7%
2f07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 43.0 3.29e-01 94.7% 62.2%
2ibdA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 44.0 3.67e-01 100.0% 83.0%
1ylmA00 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.51 41.0 3.43e-01 90.7% 66.2%
3wi3B00 1.20.58.2130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 3.25e-01 98.7% 98.1%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.50 41.0 3.51e-01 92.0% 64.8%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4529157 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.93 83.0 7.76e-01 94.7% 78.9%
4281674 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 86.0 7.49e-01 97.3% 69.5%
4604979 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 87.0 7.64e-01 100.0% 73.1%
4347676 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 83.0 7.71e-01 94.7% 78.9%
4197050 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 85.0 7.40e-01 97.3% 69.5%
4146099 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.92 83.0 7.58e-01 96.0% 76.8%
4106860 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.91 85.0 7.75e-01 98.7% 77.9%
4606821 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 83.0 7.40e-01 97.3% 73.0%
4533441 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.90 84.0 7.61e-01 98.7% 77.9%
4437729 101.1.6.4 ↗ alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.88 83.0 7.40e-01 100.0% 75.0%
4943227 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.83 48.0 6.03e-01 72.0% 97.8%
4010213 101.1.1.218 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS1 0.80 51.0 6.10e-01 72.0% 98.0%
4961899 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.80 52.0 5.55e-01 85.3% 76.9%
4984738 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 43.0 5.43e-01 84.0% 95.6%
3278077 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 54.0 5.98e-01 94.7% 95.0%
3942571 101.1.1.198 ↗ alpha arrays › HTH › HTH › Three-helical HTH › KorB 0.72 54.0 5.72e-01 94.7% 92.3%
4994233 101.1.11.203 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › UPF0175 0.70 44.0 4.36e-01 76.0% 60.0%
5040755 101.1.1.251 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.70 54.0 4.90e-01 98.7% 60.0%
4962703 101.1.1.555 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7119 0.68 58.0 6.00e-01 97.3% 100.0%
4945903 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 42.0 4.70e-01 84.0% 83.6%
3935816 4156.1.1.5 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › POLQ_helical 0.68 56.0 4.34e-01 89.3% 50.6%
3239778 4156.1.1.5 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › POLQ_helical 0.67 58.0 4.54e-01 94.7% 53.8%
3967284 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 42.0 4.59e-01 86.7% 81.7%
5054427 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.62 52.0 4.31e-01 97.3% 80.7%
3669380 109.4.1.1190 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_GCN1_C 0.62 49.0 4.05e-01 88.0% 75.0%
3927372 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 52.0 5.15e-01 97.3% 97.5%
4990528 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.58 49.0 4.73e-01 100.0% 83.5%
4998613 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.58 47.0 4.27e-01 88.0% 78.0%
3259758 109.4.1.454 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Drf_GBD 0.57 45.0 2.98e-01 84.0% 60.6%
3603231 604.18.1.0 ↗ alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) 0.55 44.0 4.13e-01 86.7% 88.9%
4927466 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.55 49.0 4.66e-01 100.0% 83.3%
4943136 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 48.0 4.58e-01 100.0% 83.3%
3456467 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.54 40.0 3.94e-01 81.3% 76.5%
3767388 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 48.0 4.09e-01 100.0% 62.4%
3959738 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.54 46.0 4.26e-01 92.0% 74.7%
3891073 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.54 45.0 2.71e-01 98.7% 72.7%
3603648 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 42.0 4.02e-01 86.7% 94.3%
3681611 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 46.0 3.68e-01 100.0% 52.3%
5042406 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.53 47.0 4.39e-01 100.0% 85.3%
3991638 11.1.1.153 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ERAP1_C 0.52 44.0 3.56e-01 96.0% 85.7%
4991127 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.52 45.0 4.02e-01 100.0% 67.3%
4334195 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 40.0 3.36e-01 86.7% 74.3%
4997929 159.1.1.1 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG 0.51 36.0 3.32e-01 81.3% 56.0%
3240455 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.51 42.0 3.96e-01 90.7% 86.7%