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MN988542.1__QIG75026.1__EVC14_028__00028
Bact-VirMN988542.1__QIG75026.1__EVC14_028__00028
Identity
- Accession:
- MN988542 ↗
- Kingdom:
- phage
Quality
81.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-81
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.69 | 54.0 | 5.00e-01 | 87.9% | 94.8% |
| 1a6zA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.66 | 56.0 | 4.01e-01 | 98.3% | 60.9% |
| 1ki1B02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 51.0 | 3.78e-01 | 84.5% | 94.4% |
| 6l4lA02 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.62 | 43.0 | 3.31e-01 | 72.4% | 58.1% |
| 1zbtA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 44.0 | 3.16e-01 | 74.1% | 57.1% |
| 3ruiA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 44.0 | 2.77e-01 | 77.6% | 62.2% |
| 6e0bA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 50.0 | 3.04e-01 | 91.4% | 17.6% |
| 1kcgC00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.60 | 49.0 | 3.70e-01 | 100.0% | 52.4% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.59 | 45.0 | 4.32e-01 | 89.7% | 79.2% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 45.0 | 3.84e-01 | 84.5% | 69.7% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.59 | 41.0 | 4.05e-01 | 74.1% | 88.9% |
| 1hyrC01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.58 | 48.0 | 3.46e-01 | 96.6% | 31.7% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.58 | 46.0 | 4.01e-01 | 89.7% | 68.8% |
| 1gqeA02 | 3.30.70.1660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 3.00e-01 | 75.9% | 37.2% |
| 3gmiA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 42.0 | 2.87e-01 | 81.0% | 25.1% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.55 | 39.0 | 3.17e-01 | 75.9% | 77.1% |
| 2yztA00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 38.0 | 3.66e-01 | 72.4% | 97.0% |
| 4dw8A01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.55 | 42.0 | 3.15e-01 | 86.2% | 91.3% |
| 1gu2A00 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.54 | 41.0 | 3.21e-01 | 81.0% | 69.4% |
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 40.0 | 3.76e-01 | 82.8% | 71.2% |
| 2e1mA05 | 1.10.405.10 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 | 0.52 | 37.0 | 3.22e-01 | 77.6% | 46.2% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3179779 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.76 | 61.0 | 5.16e-01 | 84.5% | 93.3% |
| 3935794 | 1.1.1.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease | 0.75 | 53.0 | 3.88e-01 | 74.1% | 95.2% |
| 3976331 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.73 | 49.0 | 4.00e-01 | 70.7% | 37.3% |
| 3628498 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.70 | 55.0 | 5.10e-01 | 82.8% | 92.9% |
| 3556873 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.70 | 60.0 | 5.32e-01 | 91.4% | 76.2% |
| 3794324 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.69 | 53.0 | 4.97e-01 | 81.0% | 91.4% |
| 3786588 | 223.1.1.21 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like | 0.67 | 43.0 | 2.66e-01 | 81.0% | 12.0% |
| 4001570 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.66 | 56.0 | 5.13e-01 | 91.4% | 82.7% |
| 3598119 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.65 | 52.0 | 4.93e-01 | 87.9% | 84.3% |
| 3944588 | 241.1.1.9 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF3156 | 0.64 | 51.0 | 3.58e-01 | 84.5% | 37.1% |
| 3634384 | 4292.2.1.2 ↗ | a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B | 0.64 | 45.0 | 3.48e-01 | 74.1% | 60.8% |
| 3693747 | 1021.1.1.0 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases | 0.64 | 49.0 | 4.24e-01 | 84.5% | 55.3% |
| 5073392 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.64 | 51.0 | 4.30e-01 | 98.3% | 52.6% |
| 3200288 | 192.20.1.0 ↗ | alpha bundles › Long alpha-hairpin › helical hairpin domain in transcriptional anti-activator ExsD › helical hairpin domain in transcriptional anti-activator ExsD | 0.63 | 55.0 | 4.32e-01 | 94.8% | 83.3% |
| 3898301 | 233.1.1.2 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_II_beta | 0.63 | 49.0 | 4.28e-01 | 89.7% | 64.2% |
| 3843142 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.63 | 56.0 | 4.22e-01 | 98.3% | 55.6% |
| 4474519 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.62 | 42.0 | 4.19e-01 | 74.1% | 68.3% |
| 4001939 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.62 | 51.0 | 4.76e-01 | 87.9% | 85.7% |
| 2667421 | 286.1.1.5 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N | 0.62 | 43.0 | 3.23e-01 | 72.4% | 53.0% |
| 3521727 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.61 | 55.0 | 3.84e-01 | 100.0% | 54.6% |
| 3314358 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.59 | 49.0 | 4.31e-01 | 89.7% | 75.3% |
| 4030189 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.58 | 40.0 | 3.98e-01 | 72.4% | 83.3% |
| 3998218 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.58 | 44.0 | 3.32e-01 | 86.2% | 33.1% |
| 3397452 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.57 | 41.0 | 4.11e-01 | 75.9% | 88.3% |
| 4150519 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.56 | 39.0 | 3.12e-01 | 75.9% | 35.0% |
| 3619018 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 39.0 | 3.95e-01 | 75.9% | 90.0% |
| 4379683 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.55 | 47.0 | 3.23e-01 | 100.0% | 35.9% |
| 3483955 | 386.1.1.6 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 | 0.55 | 42.0 | 3.77e-01 | 86.2% | 76.5% |
| 3819232 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.54 | 38.0 | 4.08e-01 | 74.1% | 92.0% |
| 4416299 | 2487.1.1.3 ↗ | a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Aconitase_C | 0.54 | 37.0 | 2.72e-01 | 72.4% | 27.3% |
| 3903521 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.53 | 38.0 | 3.15e-01 | 79.3% | 41.9% |
| 3260512 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.52 | 33.0 | 3.38e-01 | 74.1% | 67.3% |
| 3389846 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 40.0 | 3.89e-01 | 84.5% | 100.0% |
| 5049438 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 41.0 | 3.14e-01 | 89.7% | 75.0% |