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MN988543.1__QIG75104.1__EVC15_042__00042

Bact-Vir

MN988543.1__QIG75104.1__EVC15_042__00042

Identity

Accession:
MN988543 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-73
PDB
D2 high residues 91-166
PDB
D3 high residues 202-259
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 56.0 3.84e-01 91.4% 29.7%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 46.0 4.64e-01 100.0% 75.0%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 44.0 3.49e-01 72.4% 68.1%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 4.69e-01 100.0% 82.1%
1jb0K00 1.20.860.20 Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre 0.62 43.0 4.67e-01 91.4% 91.3%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 55.0 4.90e-01 100.0% 80.7%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.62 43.0 4.08e-01 72.4% 60.0%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.61 53.0 4.66e-01 100.0% 100.0%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.59 44.0 4.01e-01 77.6% 73.3%
3ce9A02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.59 50.0 3.49e-01 96.6% 57.2%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.59 41.0 2.99e-01 74.1% 73.5%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 4.51e-01 94.8% 92.3%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.58 46.0 4.29e-01 87.9% 95.9%
3n01A00 3.30.70.2470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein-tyrosine phosphatase receptor IA-2 ectodomain 0.57 48.0 4.33e-01 100.0% 87.4%
1c2yA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.57 45.0 3.42e-01 89.7% 89.0%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 40.0 3.27e-01 72.4% 65.7%
3hinA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.56 38.0 3.89e-01 82.8% 74.5%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 44.0 3.24e-01 86.2% 77.3%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.56 39.0 3.63e-01 89.7% 57.1%
2m35A00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.56 37.0 3.92e-01 82.8% 78.8%
1kcxA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.55 47.0 2.94e-01 100.0% 23.6%
2rhqB03 3.50.40.10 Alpha Beta › 3-Layer(bba) Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 3 › Phenylalanyl-trna Synthetase, Chain B, domain 3 0.55 46.0 3.30e-01 100.0% 85.1%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.55 45.0 3.52e-01 96.6% 59.3%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.55 46.0 3.59e-01 91.4% 54.6%
2l4bA00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.54 46.0 4.09e-01 100.0% 88.6%
3pyfA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 44.0 3.31e-01 100.0% 35.8%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 34.0 3.20e-01 75.9% 50.7%
4q5nA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 45.0 3.57e-01 93.1% 66.1%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 32.0 3.15e-01 74.1% 52.2%
4rvcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.73e-01 91.4% 84.6%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3366093 6013.1.1.0 alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.82 55.0 5.51e-01 70.7% 68.3%
3301615 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.80 55.0 5.32e-01 72.4% 66.2%
3426400 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.77 54.0 5.60e-01 74.1% 78.2%
3490105 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.76 55.0 5.20e-01 79.3% 64.3%
4003225 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.74 51.0 5.25e-01 72.4% 76.4%
3534900 6013.1.1.0 alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.73 52.0 4.87e-01 74.1% 61.4%
2323867 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.71 41.0 4.09e-01 70.7% 55.7%
3212195 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.69 56.0 4.51e-01 89.7% 46.4%
4973115 2002.1.1.2 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Enolase_C 0.69 61.0 3.89e-01 100.0% 39.6%
3805362 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 59.0 4.15e-01 100.0% 74.7%
3347020 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.67 55.0 5.67e-01 91.4% 96.4%
3816176 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.67 52.0 4.32e-01 89.7% 47.6%
5001612 148.1.3.409 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › BrxL_ATPase 0.67 58.0 5.28e-01 100.0% 85.0%
3991070 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.65 52.0 3.88e-01 87.9% 35.6%
3165359 105.1.1.0 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.64 52.0 4.40e-01 91.4% 58.0%
3561226 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.64 43.0 3.33e-01 70.7% 33.3%
4315800 2004.1.1.72 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPT 0.63 50.0 3.40e-01 91.4% 88.5%
4000709 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.63 54.0 5.07e-01 98.3% 78.6%
3533067 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.63 45.0 4.30e-01 100.0% 64.3%
2075049 3787.1.1.0 alpha bundles › HAD superfamily helical bundle insertion domain 0.62 55.0 4.84e-01 100.0% 77.9%
3377792 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 50.0 4.58e-01 98.3% 76.2%
4928215 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.58 49.0 4.26e-01 98.3% 76.8%
4206404 103.4.1.26 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Rod-binding 0.58 43.0 3.79e-01 87.9% 51.6%
3611713 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.57 42.0 4.09e-01 100.0% 72.3%
3429113 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 48.0 4.31e-01 100.0% 67.1%
4468492 102.1.2.12 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HHH,HhH-GPD,EndIII_4Fe-2S 0.57 38.0 2.68e-01 100.0% 19.5%
3508952 1151.1.1.1 alpha bundles › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › Helical membrane domain in lipooligosaccharide phosphoethanolamine transferase A › EptA_B_N 0.56 46.0 3.22e-01 93.1% 69.5%
4449691 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.56 44.0 4.29e-01 87.9% 84.1%
3978659 109.4.1.109 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 0.55 41.0 2.45e-01 84.5% 17.6%
3783615 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 43.0 2.72e-01 91.4% 68.4%
4145578 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 43.0 3.35e-01 96.6% 93.6%
D4 high residues 286-333
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3idwA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.68 46.0 4.20e-01 70.8% 51.5%
6rnzA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 4.59e-01 83.3% 97.0%
2mh3A00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.67 46.0 4.11e-01 79.2% 50.0%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.67 50.0 4.58e-01 81.2% 100.0%
2cwoA02 1.10.1200.170 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › RNA silencing suppressor P21, C-terminal domain 0.66 56.0 4.71e-01 97.9% 59.0%
3eg5B01 1.10.20.40 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Formin, diaphanous GTPase-binding domain 0.64 47.0 5.01e-01 79.2% 92.7%
4fcgA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.62 48.0 2.93e-01 85.4% 26.0%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 4.34e-01 95.8% 75.0%
2mvtA00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.60 42.0 4.29e-01 79.2% 78.7%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 46.0 4.19e-01 93.8% 61.4%
3e21A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 40.0 4.26e-01 93.8% 87.5%
2damA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.59 41.0 3.77e-01 91.7% 53.7%
5vntA00 1.10.950.10 Mainly Alpha › Orthogonal Bundle › Villin Headpiece Domain; Chain A › Villin headpiece domain 0.59 48.0 4.48e-01 95.8% 82.5%
3fmyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 49.0 4.43e-01 95.8% 84.8%
2hjmA01 1.20.120.460 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like 0.58 50.0 4.15e-01 100.0% 57.0%
4fybA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 42.0 3.02e-01 85.4% 70.8%
2m35A00 1.10.60.50 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › 0.56 42.0 4.20e-01 100.0% 78.8%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 37.0 3.54e-01 85.4% 56.7%
3nkqA03 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.55 44.0 2.62e-01 91.7% 44.9%
2l2dA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.54 37.0 3.37e-01 89.6% 49.3%
1jb0K00 1.20.860.20 Mainly Alpha › Up-down Bundle › Alpha-t-alpha › Photosystem I PsaK, reaction centre 0.54 39.0 3.95e-01 85.4% 84.8%
2qtfA02 6.10.250.2860 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.53 35.0 3.61e-01 75.0% 70.2%
2l82A00 3.40.50.11230 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 46.0 3.23e-01 100.0% 77.2%
1v5kA00 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.53 45.0 3.46e-01 100.0% 82.6%
2ycdA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 36.0 3.02e-01 70.8% 74.4%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 36.0 2.77e-01 77.1% 55.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3366093 6013.1.1.0 alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.82 64.0 5.95e-01 85.4% 68.3%
3426400 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.82 63.0 6.01e-01 83.3% 72.7%
3301615 103.5.1.0 alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.80 64.0 5.76e-01 87.5% 66.2%
3534900 6013.1.1.0 alpha arrays › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 › C-terminal domains of CstF-64 0.79 59.0 5.27e-01 83.3% 57.1%
3490105 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.78 62.0 5.54e-01 89.6% 61.4%
4585952 101.1.4.17 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.72 54.0 4.83e-01 83.3% 100.0%
3347020 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.63 52.0 5.06e-01 100.0% 87.3%
4315800 2004.1.1.72 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPT 0.62 46.0 3.09e-01 89.6% 87.2%
3165359 105.1.1.0 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.61 51.0 4.15e-01 100.0% 57.0%
3611713 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.60 47.0 4.31e-01 95.8% 64.6%
3174911 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.59 40.0 3.78e-01 72.9% 53.8%
4449691 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.59 45.0 4.21e-01 85.4% 81.0%
1141858 539.1.1.0 few secondary structure elements › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like 0.56 42.0 4.20e-01 100.0% 78.8%
3783615 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.52 44.0 2.73e-01 100.0% 66.9%
3585387 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.51 36.0 2.39e-01 81.2% 83.0%