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MN988543.1__QIG75167.1__EVC15_105__00105

Bact-Vir

MN988543.1__QIG75167.1__EVC15_105__00105

Identity

Accession:
MN988543 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N2_6

TaxID: 2509744

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-127
PDB
Domain cluster: rep: MT770738.1__QNG62636.1__B1VFA_154__00150__D7-115
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 36.0 4.78e-01 76.9% 91.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 37.0 4.34e-01 74.4% 73.8%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 38.0 4.96e-01 71.8% 100.0%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.76e-01 78.6% 100.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 33.0 4.18e-01 71.8% 92.1%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 34.0 4.10e-01 72.6% 81.8%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 32.0 4.04e-01 76.1% 93.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 31.0 3.89e-01 72.6% 87.0%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.55 41.0 3.86e-01 87.2% 63.9%
1z2zA01 3.30.2350.20 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain 0.54 43.0 3.43e-01 99.1% 42.3%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 37.0 2.77e-01 75.2% 33.1%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 38.0 3.54e-01 78.6% 60.3%
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 38.0 2.82e-01 78.6% 48.1%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 46.0 4.36e-01 100.0% 95.0%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 39.0 3.65e-01 80.3% 71.0%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.51 39.0 3.60e-01 80.3% 79.3%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 3.66e-01 88.0% 98.3%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3907176 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.77 47.0 5.29e-01 74.4% 78.9%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 42.0 4.45e-01 77.8% 60.0%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.76 42.0 4.73e-01 77.8% 70.0%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 38.0 5.05e-01 76.1% 95.0%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 40.0 4.89e-01 73.5% 82.4%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 42.0 4.55e-01 81.2% 66.0%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.73 41.0 4.91e-01 80.3% 81.2%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.73 35.0 4.92e-01 76.1% 98.2%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.72 39.0 3.96e-01 79.5% 52.5%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 35.0 4.51e-01 75.2% 83.1%
4138935 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.69 44.0 5.28e-01 82.1% 100.0%
5029166 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 42.0 5.17e-01 76.1% 97.3%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.67 38.0 4.72e-01 82.9% 92.9%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 46.0 5.07e-01 79.5% 88.4%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 37.0 4.62e-01 71.8% 98.4%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 36.0 4.64e-01 78.6% 95.4%
4376886 4.1.1.241 ↗ beta barrels › SH3 › SH3 › SH3 › NifZ 0.66 44.0 5.13e-01 86.3% 100.0%
3530890 2004.1.1.402 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CABIT 0.64 42.0 4.82e-01 72.6% 89.8%
3903397 102.1.1.124 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › CABIT 0.63 39.0 4.64e-01 75.2% 91.3%
3530891 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.63 40.0 4.19e-01 80.3% 68.8%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.63 34.0 3.79e-01 74.4% 65.3%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 2.42e-01 82.1% 9.2%
3285829 4.1.1.425 ↗ beta barrels › SH3 › SH3 › SH3 › RNHCP 0.63 35.0 3.65e-01 74.4% 59.0%
3989972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.93e-01 86.3% 100.0%
4951299 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.61 44.0 4.13e-01 88.0% 60.7%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.60 41.0 3.95e-01 78.6% 62.3%
5001970 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.59 44.0 4.15e-01 89.7% 63.4%
3767452 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.35e-01 73.5% 89.1%
3948020 283.2.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.58 33.0 3.40e-01 73.5% 57.3%
5018391 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.57 42.0 3.98e-01 89.7% 62.8%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.67e-01 83.8% 97.0%
3995290 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.56 43.0 4.47e-01 82.9% 90.9%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 43.0 4.27e-01 94.0% 80.8%
3589730 4.1.1.252 ↗ beta barrels › SH3 › SH3 › SH3 › MdcG_N 0.55 35.0 4.06e-01 82.9% 93.8%
5063041 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 41.0 4.03e-01 85.5% 72.8%
3848483 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.55 44.0 4.73e-01 85.5% 100.0%
5043067 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 40.0 3.83e-01 87.2% 65.0%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.54 33.0 2.99e-01 79.5% 43.8%
3496126 4.25.1.0 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain 0.53 36.0 4.09e-01 77.8% 92.0%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.52 40.0 3.39e-01 81.2% 72.6%
4078003 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.51 42.0 4.09e-01 91.5% 81.5%
5054152 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.51 41.0 4.10e-01 94.0% 84.0%
4028378 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.51 41.0 4.01e-01 91.5% 80.0%
3249352 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.50 41.0 4.03e-01 94.0% 80.8%