←Back to structures

MN988543.1__QIG75181.1__EVC15_119__00119

Bact-Vir

MN988543.1__QIG75181.1__EVC15_119__00119

Identity

Accession:
MN988543 ↗
Kingdom:
phage

Quality

86.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N2_6

TaxID: 2509744

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-206
PDB
Domain cluster: rep: IMGVR_UViG_3300039190_000305-3300039190-Ga0399989_003201_3_1937__D82-97_167-336
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13589.13 best HATPase_c_3 28.1 2.60e-06 71.9% 75.9%
D2 high residues 211-390
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z5bB03 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 40.0 4.38e-01 90.0% 96.6%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3958084 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.61 33.0 4.17e-01 85.6% 88.6%
3595507 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.60 28.0 3.45e-01 81.7% 67.0%
4110811 212.1.1.9 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DNA_mis_repair 0.59 39.0 4.47e-01 92.2% 90.8%
3310887 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.57 39.0 4.53e-01 88.9% 99.2%
3869716 212.1.1.24 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Morc6_S5 0.55 39.0 4.23e-01 81.7% 86.0%
3246869 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.55 43.0 3.94e-01 82.8% 92.1%
3487862 212.1.1.0 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like 0.54 40.0 3.65e-01 76.7% 97.1%
3282393 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.53 40.0 4.47e-01 81.7% 97.2%
3618077 603.1.1.149 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Frag1 0.53 31.0 3.68e-01 84.4% 83.2%
3670143 5050.1.1.2 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.53 38.0 3.11e-01 73.9% 64.4%
4956606 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.52 47.0 4.58e-01 96.7% 92.8%
3968852 212.1.1.1 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › HSP90 0.51 41.0 4.43e-01 83.3% 100.0%
4957148 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.51 45.0 4.40e-01 96.1% 94.5%
3823703 212.1.1.22 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.50 46.0 4.18e-01 98.9% 89.6%
D3 high residues 397-518
PDB
Domain cluster: rep: NC_008720.1__YP_950511.1__EPNV4_gp33__00033__D413-577
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a9zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 36.0 3.71e-01 86.9% 60.5%
4mcjG00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 3.67e-01 75.4% 92.9%
1jfrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 3.29e-01 86.9% 68.1%
3icvA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 40.0 3.11e-01 85.2% 72.9%
1jx6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 35.0 3.13e-01 72.1% 58.2%
3kosA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 29.0 3.11e-01 93.4% 65.0%
3gfoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.75e-01 70.5% 79.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3399462 7579.1.1.2 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.63 51.0 3.74e-01 86.1% 72.7%
3687379 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.61 39.0 3.82e-01 87.7% 58.6%
3939874 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 35.0 4.19e-01 86.9% 83.3%
3598389 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 36.0 3.66e-01 86.9% 60.0%
3392749 7579.1.1.2 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.59 46.0 3.56e-01 83.6% 69.8%
3393267 7579.1.1.2 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase 0.59 46.0 3.37e-01 84.4% 65.9%
5018929 3703.1.1.0 ↗ a/b three-layered sandwiches › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain › HSP90 C-terminal a/b domain 0.57 43.0 4.27e-01 91.8% 77.6%
2701948 7510.1.1.1 ↗ a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.54 32.0 3.72e-01 100.0% 84.1%
3728129 7579.1.1.6 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.52 43.0 3.23e-01 90.2% 86.6%
3111967 7579.1.1.46 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Chlorophyllase2 0.52 41.0 3.27e-01 86.9% 68.1%
3906378 7579.1.1.57 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_11 0.51 44.0 3.57e-01 95.9% 86.8%
D4 medium residues 519-634
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eljA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 38.0 3.31e-01 70.7% 96.2%
D5 medium residues 635-767
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3173736 5050.1.1.55 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr, MFS_1 0.52 43.0 3.05e-01 93.2% 74.5%