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MN988551.1__QIG76012.1__EVC23_013__00013

Bact-Vir

MN988551.1__QIG76012.1__EVC23_013__00013

Identity

Accession:
MN988551 ↗
Kingdom:
phage

Quality

78.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_N3_8

TaxID: 2509748

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-123
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.77 62.0 5.89e-01 100.0% 74.0%
2k1gA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.75 61.0 5.71e-01 100.0% 72.1%
2evrA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.70 63.0 5.61e-01 99.1% 70.9%
4hffA00 3.90.1720.70 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 50.0 4.44e-01 95.3% 71.6%
3kb5A00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 43.0 3.58e-01 79.4% 87.0%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.56 40.0 3.90e-01 73.8% 98.3%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 43.0 4.00e-01 93.5% 91.5%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 3.30e-01 72.0% 74.5%
4p25D01 2.40.510.10 Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses 0.50 35.0 2.90e-01 72.0% 93.8%
4pbpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 3.00e-01 76.6% 65.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979648 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.73 65.0 5.80e-01 100.0% 70.8%
3971907 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.71 63.0 5.84e-01 100.0% 76.3%
161350 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.70 63.0 5.64e-01 99.1% 70.5%
5014896 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.69 51.0 4.32e-01 97.2% 48.2%
2141406 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.68 62.0 5.76e-01 99.1% 80.0%
3385461 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.63 57.0 5.13e-01 100.0% 91.0%
3427234 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 50.0 3.86e-01 88.8% 97.6%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.60 51.0 3.79e-01 95.3% 92.4%
3963450 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.58 43.0 4.02e-01 99.1% 62.2%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.57 40.0 4.47e-01 78.5% 97.5%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.55 41.0 4.46e-01 86.0% 98.8%
3586233 4135.1.1.0 ↗ beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like 0.52 36.0 3.29e-01 71.0% 75.7%
D2 high residues 134-199
PDB