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MN988554.1__QIG76497.1__EVC26_051__00051

Bact-Vir

MN988554.1__QIG76497.1__EVC26_051__00051

Identity

Accession:
MN988554 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_I72

TaxID: 2509593

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-105
PDB
Domain cluster: rep: OP714164.2__UZS00935.1__X__00127__D3-107
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22479.3 best Pam3_gp18 73.0 3.40e-20 93.3% 92.1%
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3holA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.67 38.0 4.17e-01 76.0% 67.4%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 35.0 4.42e-01 83.7% 90.3%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.63 35.0 4.45e-01 71.2% 94.9%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.62 47.0 5.03e-01 86.5% 93.3%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.62 36.0 4.52e-01 74.0% 95.2%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.61 44.0 4.06e-01 76.0% 83.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.58 32.0 4.09e-01 83.7% 96.5%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 42.0 3.64e-01 76.9% 96.4%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.57 42.0 3.86e-01 78.8% 99.3%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 31.0 3.88e-01 82.7% 87.7%
4g2sA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 45.0 4.55e-01 87.5% 89.6%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 44.0 4.04e-01 83.7% 77.0%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.56 32.0 3.91e-01 84.6% 90.6%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.56 48.0 3.75e-01 99.0% 78.6%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 44.0 3.83e-01 86.5% 95.7%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.55 39.0 4.29e-01 88.5% 92.9%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.20e-01 80.8% 57.3%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 33.0 3.88e-01 89.4% 94.2%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 45.0 3.26e-01 99.0% 79.7%
3nqhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 42.0 3.05e-01 87.5% 47.2%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.52 38.0 3.42e-01 76.9% 90.7%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 45.0 3.28e-01 99.0% 60.3%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.52 43.0 3.52e-01 90.4% 84.1%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 41.0 2.93e-01 88.5% 45.5%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.94e-01 94.2% 90.8%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 43.0 3.09e-01 91.3% 92.5%
7r5yA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 44.0 3.07e-01 100.0% 90.8%
1qwoA01 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 44.0 3.07e-01 100.0% 95.4%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 43.0 3.90e-01 94.2% 69.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 45.0 3.24e-01 100.0% 90.6%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.51 37.0 3.26e-01 78.8% 54.5%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 37.0 3.29e-01 78.8% 53.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045854 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.70 36.0 4.09e-01 72.1% 65.0%
3242777 3459.1.1.2 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF4773 0.64 56.0 5.38e-01 97.1% 91.6%
3262671 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.62 48.0 2.89e-01 81.7% 16.4%
3825621 3459.1.1.3 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › DUF868 0.61 48.0 5.04e-01 85.6% 98.9%
3715886 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 44.0 3.05e-01 79.8% 98.6%
3479716 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.58 43.0 4.60e-01 91.3% 94.1%
3597115 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.57 48.0 4.71e-01 93.3% 99.1%
4933430 4041.1.1.1 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.57 44.0 3.73e-01 82.7% 92.0%
3227607 5087.2.1.2 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.57 48.0 3.52e-01 93.3% 87.9%
1349153 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.56 47.0 3.09e-01 92.3% 34.0%
4933772 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.56 43.0 3.95e-01 81.7% 85.9%
3440037 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 3.18e-01 92.3% 43.7%
3657264 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.55 49.0 4.38e-01 99.0% 95.3%
3666722 11.10.1.5 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.55 46.0 4.17e-01 92.3% 84.1%
4849080 5084.1.1.44 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HphA_C 0.55 39.0 4.34e-01 79.8% 97.5%
3404871 719.1.1.0 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 44.0 4.38e-01 86.5% 81.8%
4095676 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.55 46.0 3.91e-01 93.3% 81.1%
3340789 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 44.0 3.03e-01 86.5% 27.7%
3892746 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.54 47.0 3.23e-01 97.1% 65.4%
3987705 4178.1.1.0 ↗ beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain 0.54 37.0 3.89e-01 90.4% 76.8%
3167247 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 46.0 3.13e-01 92.3% 43.7%
3416676 301.7.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like 0.53 37.0 3.33e-01 71.2% 97.2%
4091266 5.1.11.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.53 45.0 2.82e-01 95.2% 34.2%
3059869 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.53 44.0 4.09e-01 90.4% 72.7%
4072360 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 48.0 3.65e-01 100.0% 57.3%
3431397 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 45.0 3.17e-01 97.1% 84.5%
3814287 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 40.0 2.78e-01 85.6% 24.0%
3300916 5.1.4.231 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FBA_3 0.52 43.0 3.17e-01 91.3% 54.3%
3737725 2484.1.1.48 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.52 40.0 3.37e-01 82.7% 98.9%
4954762 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.52 42.0 3.98e-01 88.5% 90.4%
3212893 5.1.3.57 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › IKI3 0.52 44.0 3.10e-01 97.1% 70.8%
3816749 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 43.0 3.05e-01 91.3% 53.8%
4496525 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.51 39.0 3.50e-01 82.7% 99.4%
4122796 2004.1.1.1154 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, SbcC_Walker_B 0.51 46.0 3.05e-01 100.0% 70.6%
3618164 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.51 43.0 2.71e-01 95.2% 31.9%
4982005 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 46.0 2.99e-01 97.1% 85.0%
3435911 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 32.0 3.23e-01 92.3% 60.9%
3613250 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 44.0 2.91e-01 100.0% 82.0%
3924310 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.91e-01 92.3% 33.8%
5032886 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 46.0 2.80e-01 100.0% 79.3%
4950969 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 46.0 2.96e-01 100.0% 33.8%
5059555 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.50 45.0 3.06e-01 98.1% 81.3%