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MN988556.1__QIG76684.1__EVC28_060__00060

Bact-Vir

MN988556.1__QIG76684.1__EVC28_060__00060

Identity

Accession:
MN988556 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_I1_23

TaxID: 2509727

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-179
PDB
Domain cluster: rep: IMGVR_UViG_3300006225_000053-3300006225-Ga0082206_10217914__D28-177
D2 medium residues 212-290
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hr2A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 43.0 3.52e-01 74.7% 55.8%
2ycdA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.59 40.0 3.60e-01 72.2% 89.7%
3vkgB03 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.57 43.0 3.57e-01 83.5% 78.2%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.57 46.0 3.24e-01 92.4% 40.8%
4besA02 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.56 39.0 3.42e-01 75.9% 66.2%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 40.0 3.51e-01 77.2% 92.6%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 37.0 3.40e-01 72.2% 92.9%
4dllB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 39.0 3.37e-01 77.2% 86.2%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 39.0 3.45e-01 77.2% 93.4%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 39.0 3.39e-01 79.7% 91.6%
5l0wB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 37.0 3.17e-01 74.7% 50.7%
6vynC01 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.52 35.0 3.61e-01 70.9% 86.5%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 39.0 3.27e-01 84.8% 81.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5083839 2005.1.1.14 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › PAPS_reduct 0.83 61.0 4.20e-01 75.9% 26.4%
3789530 109.4.1.11 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PI3Ka 0.67 48.0 3.27e-01 74.7% 37.1%
3764990 604.39.1.0 ↗ alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.65 48.0 3.77e-01 79.7% 86.3%
3651295 109.4.1.1374 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, TPR_24 0.64 44.0 3.43e-01 72.2% 44.6%
4969034 5082.1.1.1 ↗ alpha bundles › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation efflux protein transmembrane domain-like › Cation_efflux 0.60 44.0 3.31e-01 78.5% 73.0%
3617171 109.4.1.271 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › FAN1_TPR 0.58 42.0 3.36e-01 75.9% 58.8%
3678715 109.4.1.1260 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, PPR_long 0.58 42.0 2.83e-01 77.2% 42.9%
3338362 109.4.1.1261 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_1, PPR_2, PPR_long 0.57 41.0 3.22e-01 74.7% 43.5%
1883323 3455.1.1.4 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › ATR1_WY-dom 0.56 40.0 3.90e-01 75.9% 96.6%
3657262 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.55 39.0 3.28e-01 74.7% 42.9%
3790515 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.55 39.0 3.10e-01 74.7% 84.7%
3943374 633.10.1.16 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › FUSC 0.55 44.0 3.75e-01 93.7% 93.3%
3986005 3236.1.1.22 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › FUSC 0.55 45.0 3.74e-01 93.7% 93.3%
4150361 601.1.2.77 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › FUSC 0.54 43.0 3.67e-01 93.7% 94.0%
2723814 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.54 36.0 3.63e-01 70.9% 78.0%
3327695 109.4.1.189 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2 0.54 37.0 3.28e-01 74.7% 79.2%
148583 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.54 38.0 3.41e-01 77.2% 83.3%
3782526 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.81e-01 79.7% 82.2%
3396848 633.10.1.0 ↗ alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.52 37.0 3.27e-01 75.9% 75.0%