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MN988556.1__QIG76690.1__EVC28_066__00066
Bact-VirMN988556.1__QIG76690.1__EVC28_066__00066
Identity
- Accession:
- MN988556 ↗
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-86
Domain cluster:
representative
D2
high
residues 94-160
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.89 | 83.0 | 7.27e-01 | 100.0% | 71.3% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.88 | 80.0 | 6.71e-01 | 100.0% | 61.7% |
| 2x48A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.84 | 56.0 | 6.18e-01 | 100.0% | 85.2% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 48.0 | 4.50e-01 | 85.1% | 48.8% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.83 | 48.0 | 4.83e-01 | 85.1% | 58.2% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.81 | 47.0 | 4.83e-01 | 85.1% | 60.9% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 47.0 | 4.93e-01 | 85.1% | 68.3% |
| 1s9qA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.65 | 50.0 | 3.48e-01 | 83.6% | 83.0% |
| 1e3pA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.64 | 47.0 | 4.39e-01 | 85.1% | 62.7% |
| 4g3aB00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.62 | 53.0 | 3.67e-01 | 97.0% | 42.3% |
| 3r72A00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.62 | 51.0 | 4.21e-01 | 92.5% | 83.6% |
| 3feyA02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 51.0 | 3.77e-01 | 97.0% | 73.4% |
| 4pt1B00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.57 | 49.0 | 4.06e-01 | 100.0% | 72.7% |
| 7ml0M01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.56 | 47.0 | 4.47e-01 | 100.0% | 80.5% |
| 3c8eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 47.0 | 3.69e-01 | 100.0% | 54.8% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.55 | 47.0 | 3.66e-01 | 98.5% | 65.4% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.55 | 49.0 | 4.23e-01 | 100.0% | 71.8% |
| 2fx0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 47.0 | 3.81e-01 | 100.0% | 75.8% |
| 2cz2A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 47.0 | 3.84e-01 | 100.0% | 65.9% |
| 1ywfA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.53 | 45.0 | 3.17e-01 | 100.0% | 79.3% |
| 1aisB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 46.0 | 4.15e-01 | 100.0% | 72.3% |
| 8befJ01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.52 | 41.0 | 3.07e-01 | 95.5% | 33.5% |
| 3rkoF01 | 1.20.120.1200 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ | 0.52 | 40.0 | 3.11e-01 | 88.1% | 35.6% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.52 | 40.0 | 4.09e-01 | 88.1% | 88.9% |
| 4gf0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 44.0 | 3.78e-01 | 100.0% | 76.1% |
| 2ibdA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 45.0 | 3.52e-01 | 100.0% | 83.7% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 46.0 | 3.53e-01 | 100.0% | 65.1% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4146099 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.93 | 85.0 | 7.42e-01 | 100.0% | 68.4% |
| 4281674 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.93 | 85.0 | 7.13e-01 | 100.0% | 61.9% |
| 4604979 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.93 | 85.0 | 7.15e-01 | 100.0% | 62.5% |
| 4051624 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.93 | 86.0 | 7.19e-01 | 100.0% | 62.9% |
| 4529157 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.92 | 84.0 | 7.49e-01 | 100.0% | 72.2% |
| 4524648 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.92 | 85.0 | 7.12e-01 | 100.0% | 62.9% |
| 4270831 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.92 | 84.0 | 7.10e-01 | 100.0% | 62.9% |
| 4197050 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.92 | 85.0 | 7.11e-01 | 100.0% | 62.9% |
| 4601417 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.92 | 84.0 | 7.37e-01 | 100.0% | 69.5% |
| 4347676 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.91 | 82.0 | 7.36e-01 | 100.0% | 72.2% |
| 4174198 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 83.0 | 7.11e-01 | 100.0% | 66.0% |
| 4606105 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 84.0 | 7.22e-01 | 100.0% | 67.0% |
| 4346134 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 84.0 | 7.07e-01 | 100.0% | 64.4% |
| 4379676 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 82.0 | 6.91e-01 | 100.0% | 62.9% |
| 4125972 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.90 | 82.0 | 7.03e-01 | 100.0% | 66.0% |
| 4102935 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.89 | 83.0 | 7.01e-01 | 100.0% | 63.8% |
| 4559046 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.89 | 83.0 | 7.01e-01 | 100.0% | 63.8% |
| 4067934 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.89 | 81.0 | 7.29e-01 | 100.0% | 73.3% |
| 4533441 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.87 | 80.0 | 7.01e-01 | 100.0% | 69.5% |
| 3512259 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.86 | 79.0 | 6.72e-01 | 100.0% | 73.3% |
| 3987778 | 101.1.1.118 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_IS630 | 0.85 | 52.0 | 5.77e-01 | 73.1% | 76.4% |
| 3644409 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.67 | 48.0 | 4.24e-01 | 85.1% | 51.0% |
| 3413267 | 101.1.1.66 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 | 0.66 | 48.0 | 4.53e-01 | 85.1% | 63.7% |
| 4428577 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 49.0 | 4.30e-01 | 86.6% | 54.0% |
| 4336814 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 51.0 | 4.50e-01 | 85.1% | 58.9% |
| 3896763 | 101.1.1.66 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_5 | 0.64 | 51.0 | 4.70e-01 | 85.1% | 67.1% |
| 4656715 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.63 | 44.0 | 4.00e-01 | 85.1% | 52.6% |
| 4217329 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.62 | 46.0 | 3.75e-01 | 85.1% | 43.3% |
| 3980517 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.61 | 43.0 | 4.51e-01 | 86.6% | 81.7% |
| 4965872 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.59 | 49.0 | 4.35e-01 | 100.0% | 63.0% |
| 5061156 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.57 | 50.0 | 4.16e-01 | 100.0% | 55.8% |
| 3813323 | 109.4.1.1193 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_LIN_2nd | 0.56 | 47.0 | 3.62e-01 | 92.5% | 60.0% |
| 3378930 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.56 | 49.0 | 4.02e-01 | 100.0% | 53.6% |
| 3767388 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 49.0 | 4.02e-01 | 100.0% | 59.2% |
| 4927741 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 45.0 | 3.93e-01 | 100.0% | 58.2% |
| 3655226 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.55 | 49.0 | 3.88e-01 | 100.0% | 54.1% |
| 3511544 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 49.0 | 3.78e-01 | 100.0% | 51.0% |
| 3709167 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 3.54e-01 | 98.5% | 45.9% |
| 3615762 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 45.0 | 3.60e-01 | 98.5% | 68.7% |
| 4991128 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 47.0 | 4.23e-01 | 100.0% | 80.0% |
| 4947863 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 47.0 | 4.31e-01 | 100.0% | 74.4% |
| 3273891 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.53 | 46.0 | 3.87e-01 | 100.0% | 59.2% |
| 3968335 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.53 | 41.0 | 4.32e-01 | 91.0% | 96.7% |
| 3703169 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.52 | 42.0 | 3.27e-01 | 91.0% | 94.4% |
| 3704770 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.52 | 41.0 | 3.44e-01 | 89.6% | 96.9% |
| 3693111 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.52 | 42.0 | 3.29e-01 | 89.6% | 85.5% |
| 4084484 | 6155.1.1.17 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N | 0.51 | 45.0 | 4.39e-01 | 100.0% | 92.0% |
| 3741846 | 145.1.1.1 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain › F-box | 0.51 | 32.0 | 2.90e-01 | 74.6% | 42.0% |