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MN988557.1__QIG76799.1__EVC29_098__00097

Bact-Vir

MN988557.1__QIG76799.1__EVC29_098__00097

Identity

Accession:
MN988557 ↗
Kingdom:
phage

Quality

76.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_Y52

TaxID: 2509783

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 8-80
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hu1A01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.56 44.0 4.08e-01 87.7% 91.7%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 3.55e-01 72.6% 76.5%
4mdwA00 2.30.30.1210 Mainly Beta › Roll › SH3 type barrels. › Domain of unknown function DUF1541 0.54 38.0 3.08e-01 75.3% 89.0%
5c3pD00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.53 46.0 3.08e-01 100.0% 71.0%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 45.0 4.24e-01 100.0% 84.6%
1a7hA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.52 42.0 4.01e-01 95.9% 76.7%
3d30A01 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.52 42.0 3.81e-01 94.5% 97.2%
2qhlD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 43.0 3.87e-01 98.6% 86.2%
3pm9A02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 43.0 3.72e-01 97.3% 95.9%
2bv2A00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.51 40.0 3.92e-01 93.2% 77.1%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 43.0 3.93e-01 98.6% 79.8%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.73e-01 78.1% 81.8%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.51 43.0 2.92e-01 100.0% 83.5%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3567640 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.66 43.0 4.90e-01 90.4% 98.0%
4321108 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.64 45.0 5.01e-01 90.4% 98.2%
3598306 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 42.0 3.55e-01 86.3% 89.8%
3611762 1.1.2.7 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › CDC48_N 0.54 42.0 3.94e-01 87.7% 92.6%
3976988 10.12.1.8 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.53 46.0 3.68e-01 98.6% 51.0%
349867 1.1.2.9 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › DPBB_1 0.52 43.0 3.80e-01 94.5% 95.5%
4013442 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.52 41.0 4.00e-01 90.4% 100.0%
3550731 72.1.1.1 ↗ beta sandwiches › gamma-Crystallin-like › gamma-Crystallin-like › gamma-Crystallin-like › Crystall 0.52 41.0 3.88e-01 95.9% 71.0%
4609257 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.51 40.0 2.71e-01 89.0% 44.8%
4995354 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 40.0 3.90e-01 87.7% 100.0%
3391395 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.51 42.0 3.92e-01 97.3% 100.0%
3734105 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 42.0 4.05e-01 98.6% 90.0%