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MN988557.1__QIG76814.1__EVC29_113__00112
Bact-VirMN988557.1__QIG76814.1__EVC29_113__00112
Identity
- Accession:
- MN988557 ↗
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-58
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.69 | 43.0 | 3.88e-01 | 86.0% | 45.1% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.67 | 46.0 | 2.92e-01 | 72.0% | 68.3% |
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.65 | 42.0 | 2.96e-01 | 100.0% | 20.1% |
| 2ab5B01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.64 | 45.0 | 3.44e-01 | 100.0% | 30.5% |
| 2ychA02 | 3.30.1490.300 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.63 | 52.0 | 4.97e-01 | 100.0% | 78.3% |
| 2nrqA00 | 3.30.1440.10 | Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 | 0.63 | 46.0 | 3.49e-01 | 100.0% | 29.9% |
| 1av5A00 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.63 | 49.0 | 3.83e-01 | 100.0% | 38.9% |
| 3ttqA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 51.0 | 3.25e-01 | 92.0% | 75.4% |
| 6j09A04 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.62 | 46.0 | 4.20e-01 | 100.0% | 58.4% |
| 4r9iA01 | 3.30.497.10 | Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2 | 0.61 | 52.0 | 3.28e-01 | 100.0% | 77.0% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 45.0 | 4.07e-01 | 100.0% | 56.4% |
| 5zi2A02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.60 | 52.0 | 3.52e-01 | 100.0% | 27.3% |
| 4hvtA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 40.0 | 2.47e-01 | 72.0% | 11.5% |
| 2pd8B00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 46.0 | 3.50e-01 | 94.0% | 55.7% |
| 1e5tA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 39.0 | 2.37e-01 | 72.0% | 10.6% |
| 5ccbA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 42.0 | 2.79e-01 | 80.0% | 36.7% |
| 5anvA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.55 | 44.0 | 3.21e-01 | 98.0% | 30.1% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 43.0 | 3.14e-01 | 88.0% | 72.6% |
| 4qclA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 45.0 | 3.58e-01 | 96.0% | 43.2% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 45.0 | 3.15e-01 | 94.0% | 82.5% |
| 2oo4A02 | 3.30.70.3310 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 43.0 | 3.50e-01 | 100.0% | 44.1% |
| 1a3wA01 | 3.40.1380.20 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › Pyruvate kinase, C-terminal domain | 0.54 | 42.0 | 3.12e-01 | 100.0% | 29.7% |
| 2lboA00 | 3.90.640.70 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › | 0.53 | 44.0 | 3.43e-01 | 100.0% | 65.9% |
| 3w7tA03 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.53 | 46.0 | 2.71e-01 | 100.0% | 30.0% |
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.53 | 36.0 | 3.71e-01 | 92.0% | 76.1% |
| 6x6aA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 38.0 | 2.47e-01 | 82.0% | 40.6% |
| 3h3hB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 46.0 | 3.49e-01 | 100.0% | 74.2% |
| 4fvmA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.41e-01 | 100.0% | 51.5% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 38.0 | 2.63e-01 | 86.0% | 77.4% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 46.0 | 3.20e-01 | 100.0% | 41.0% |
| 8gjaD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 2.54e-01 | 92.0% | 64.1% |
| 6canA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 44.0 | 2.73e-01 | 100.0% | 92.1% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012702 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.70 | 49.0 | 3.71e-01 | 100.0% | 32.2% |
| 4899007 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.67 | 51.0 | 4.65e-01 | 100.0% | 61.1% |
| 4538961 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.65 | 49.0 | 4.39e-01 | 100.0% | 56.0% |
| 4169399 | 304.14.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR | 0.65 | 49.0 | 4.32e-01 | 94.0% | 54.4% |
| 4565003 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.64 | 52.0 | 4.02e-01 | 100.0% | 37.7% |
| 5056801 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.63 | 51.0 | 3.96e-01 | 100.0% | 38.4% |
| 5004772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 47.0 | 3.84e-01 | 82.0% | 74.4% |
| 5049353 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.61 | 46.0 | 3.62e-01 | 94.0% | 35.2% |
| 4551342 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.61 | 54.0 | 4.52e-01 | 100.0% | 64.7% |
| 3839655 | 235.1.1.5 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transgly | 0.61 | 46.0 | 2.94e-01 | 84.0% | 16.4% |
| 4512243 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.61 | 46.0 | 4.38e-01 | 100.0% | 70.0% |
| 3588825 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.61 | 48.0 | 2.86e-01 | 100.0% | 68.8% |
| 3255418 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.60 | 48.0 | 2.94e-01 | 96.0% | 14.0% |
| 3703909 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.59 | 49.0 | 3.06e-01 | 100.0% | 16.8% |
| 3928465 | 70.3.1.13 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET_TTL | 0.58 | 40.0 | 2.67e-01 | 74.0% | 21.4% |
| 3959244 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.58 | 51.0 | 4.21e-01 | 100.0% | 61.1% |
| 5044501 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 48.0 | 3.83e-01 | 100.0% | 45.5% |
| 3731895 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.57 | 47.0 | 4.24e-01 | 94.0% | 98.6% |
| 4978118 | 241.1.1.5 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 | 0.56 | 50.0 | 3.50e-01 | 100.0% | 39.4% |
| 4945661 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.56 | 47.0 | 3.09e-01 | 96.0% | 84.7% |
| 5009448 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.56 | 46.0 | 3.59e-01 | 100.0% | 45.6% |
| 3324497 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.55 | 45.0 | 3.46e-01 | 92.0% | 72.2% |
| 3993195 | 859.1.1.0 ↗ | a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 | 0.55 | 47.0 | 3.56e-01 | 100.0% | 54.6% |
| 3302473 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.55 | 46.0 | 2.88e-01 | 100.0% | 17.2% |
| 3687618 | 304.9.1.79 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28976 | 0.55 | 40.0 | 2.99e-01 | 100.0% | 26.7% |
| 3513481 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.55 | 39.0 | 2.91e-01 | 80.0% | 46.7% |
| 4917097 | 10.1.1.79 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › RYDR_Jsol | 0.54 | 38.0 | 2.50e-01 | 76.0% | 16.8% |
| 3363393 | 2003.1.5.73 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 | 0.54 | 39.0 | 2.55e-01 | 78.0% | 37.3% |
| 1179567 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.54 | 40.0 | 3.76e-01 | 100.0% | 63.8% |
| 4953226 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.52 | 33.0 | 3.07e-01 | 92.0% | 49.2% |
| 3969531 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.52 | 43.0 | 2.59e-01 | 96.0% | 21.8% |
| 4008588 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.50 | 37.0 | 3.08e-01 | 88.0% | 40.9% |
| 3404546 | 7518.1.1.1 ↗ | a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C | 0.50 | 42.0 | 3.06e-01 | 96.0% | 79.3% |