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MN988558.1__QIG76836.1__EVC30_007__00007

Bact-Vir

MN988558.1__QIG76836.1__EVC30_007__00007

Identity

Accession:
MN988558 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_Y1_11

TaxID: 2509770

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-142
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b60A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 54.0 4.60e-01 100.0% 64.7%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.61 51.0 4.40e-01 100.0% 58.3%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 55.0 5.47e-01 100.0% 100.0%
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.59 45.0 4.64e-01 98.9% 84.3%
3gzaB02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 53.0 5.24e-01 100.0% 98.0%
4zxeC00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 53.0 4.65e-01 100.0% 96.3%
5iryA05 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.58 42.0 4.36e-01 93.6% 83.5%
1nkgA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 52.0 4.26e-01 100.0% 98.3%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 52.0 4.37e-01 100.0% 94.2%
2yfuA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 51.0 4.51e-01 100.0% 95.7%
1t4wA00 2.60.40.720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 49.0 3.96e-01 97.9% 81.6%
3m1hD00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.19e-01 100.0% 99.4%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 50.0 4.16e-01 100.0% 54.7%
4aw7A03 2.60.120.1200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 52.0 4.73e-01 100.0% 91.8%
1o59A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 51.0 4.51e-01 100.0% 98.6%
3km5A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.08e-01 100.0% 96.1%
1w9yA00 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.56 46.0 3.29e-01 90.4% 74.2%
7wdtA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 50.0 4.31e-01 100.0% 98.0%
2yc2A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 51.0 4.54e-01 100.0% 99.2%
4lhsA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 51.0 4.34e-01 100.0% 94.6%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 4.05e-01 100.0% 97.8%
1cauA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 35.0 2.88e-01 100.0% 32.6%
1g43A00 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.55 48.0 4.08e-01 100.0% 62.5%
8gsxA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 4.17e-01 100.0% 62.3%
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 42.0 3.39e-01 84.0% 88.8%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 36.0 3.06e-01 100.0% 39.6%
7zgmA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 41.0 3.14e-01 84.0% 73.8%
3winE03 2.60.120.1090 Mainly Beta › Sandwich › Jelly Rolls › 0.54 47.0 4.52e-01 98.9% 97.3%
4indA03 2.60.120.1330 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.47e-01 100.0% 93.3%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.53 44.0 3.49e-01 100.0% 42.1%
4llfD02 2.60.40.4030 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 48.0 4.43e-01 100.0% 90.8%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.53 45.0 4.01e-01 97.9% 77.8%
4es8B01 2.60.120.1240 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.66e-01 98.9% 61.2%
1tvgA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 47.0 4.16e-01 100.0% 96.3%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.90e-01 100.0% 95.1%
3kmhA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 41.0 3.21e-01 100.0% 37.2%
7t4dA01 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 46.0 3.31e-01 100.0% 59.8%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.43e-01 100.0% 69.1%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.21e-01 92.6% 90.2%
4tw1B00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 46.0 3.31e-01 100.0% 59.2%
1wckA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.07e-01 100.0% 97.1%
1epwA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.42e-01 100.0% 88.0%
6vt2A01 2.60.40.4140 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.91e-01 89.4% 80.3%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.51 41.0 3.51e-01 100.0% 53.9%
5bpxA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 3.26e-01 100.0% 49.7%
3h8uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 33.0 3.05e-01 97.9% 50.8%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3582449 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.72 52.0 5.81e-01 97.9% 95.9%
2491354 4182.1.1.3 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C 0.67 50.0 5.05e-01 100.0% 78.1%
3397770 10.32.1.235 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MBF2 0.66 53.0 5.28e-01 100.0% 84.2%
3548353 12.2.1.8 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › UPF0556 0.62 49.0 4.41e-01 100.0% 60.0%
4028153 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.62 48.0 3.86e-01 100.0% 41.6%
3605972 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 55.0 5.22e-01 100.0% 96.4%
3860289 11.1.1.297 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Integrin_A_Ig_2 0.60 53.0 4.51e-01 100.0% 60.0%
3270934 4182.1.1.2 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.60 54.0 5.24e-01 100.0% 94.3%
3786014 10.32.1.237 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Mid1 0.60 54.0 4.72e-01 100.0% 97.1%
4062534 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.59 53.0 4.85e-01 100.0% 91.1%
3718839 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.59 47.0 4.22e-01 100.0% 61.5%
5044901 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 54.0 5.04e-01 100.0% 83.5%
3285854 4182.1.1.0 ↗ beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.58 53.0 4.74e-01 100.0% 85.3%
4323842 10.1.1.24 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Cleaved_Adhesin 0.58 53.0 4.23e-01 100.0% 97.2%
3267244 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.58 42.0 3.16e-01 77.7% 58.4%
1787958 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 52.0 4.54e-01 100.0% 95.0%
5042255 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 52.0 4.59e-01 100.0% 95.6%
3275692 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 51.0 4.04e-01 100.0% 78.8%
3902625 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 5.06e-01 95.7% 100.0%
4526685 10.32.1.208 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cleaved_Adhesin 0.57 50.0 4.11e-01 100.0% 95.6%
3848806 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 50.0 4.60e-01 100.0% 91.9%
5041322 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 51.0 4.96e-01 100.0% 97.1%
3576528 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 47.0 4.52e-01 93.6% 98.2%
5039322 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 52.0 4.98e-01 98.9% 90.5%
4181607 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 48.0 4.50e-01 100.0% 76.7%
5005760 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 48.0 4.39e-01 100.0% 70.8%
5040271 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 51.0 4.46e-01 100.0% 91.4%
5042048 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 51.0 3.94e-01 100.0% 96.6%
3491700 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 3.68e-01 100.0% 49.4%
3885057 10.32.1.214 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BRINP 0.56 48.0 4.07e-01 100.0% 62.9%
4162574 10.32.1.238 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.56 51.0 4.55e-01 100.0% 86.9%
4978088 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.56 50.0 4.69e-01 98.9% 87.8%
4941590 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 40.0 3.48e-01 100.0% 48.0%
3624991 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 50.0 4.85e-01 100.0% 90.5%
4477417 10.32.1.208 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Cleaved_Adhesin 0.55 49.0 3.96e-01 100.0% 93.0%
3230709 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 48.0 3.76e-01 98.9% 65.2%
3858828 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 39.0 4.05e-01 98.9% 82.4%
3508380 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 48.0 4.37e-01 100.0% 98.5%
3919667 269.1.1.3 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › COLFI 0.54 48.0 3.75e-01 100.0% 74.5%
3552097 11.1.1.242 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RET_CLD3 0.54 48.0 4.27e-01 100.0% 85.2%
3930019 10.32.1.216 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › MAM 0.54 48.0 3.59e-01 100.0% 94.2%
3418004 10.32.1.38 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like 0.54 48.0 4.10e-01 100.0% 91.6%
3519988 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 49.0 4.65e-01 100.0% 90.0%
1298682 10.32.1.168 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › HA70_C 0.54 47.0 4.23e-01 98.9% 79.9%
3886020 4081.1.1.2 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT 0.53 46.0 3.58e-01 100.0% 44.4%
3246388 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 48.0 4.43e-01 100.0% 84.9%
4950253 10.20.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.53 42.0 3.92e-01 100.0% 68.3%
3251814 10.32.1.241 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › SAC9_GBDL_2nd 0.53 46.0 3.71e-01 100.0% 50.5%
3537641 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.53 47.0 3.16e-01 98.9% 31.5%
5020586 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 47.0 3.96e-01 100.0% 59.4%
3500032 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 46.0 4.27e-01 100.0% 77.5%
3621494 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 4.21e-01 100.0% 80.0%
3507103 11.1.5.94 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.52 43.0 2.97e-01 100.0% 25.6%
3796900 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 46.0 4.30e-01 100.0% 88.2%
5043233 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 42.0 4.13e-01 100.0% 85.0%
3502750 10.4.1.1 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.51 44.0 3.87e-01 98.9% 78.7%
5044223 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 43.0 4.25e-01 100.0% 88.0%
5003083 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.71e-01 97.9% 94.5%
3267022 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 45.0 3.95e-01 100.0% 71.0%