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MN988558.1__QIG76914.1__EVC30_085__00085

Bact-Vir

MN988558.1__QIG76914.1__EVC30_085__00085

Identity

Accession:
MN988558 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-60
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.79 43.0 4.57e-01 92.5% 60.9%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 43.0 4.55e-01 94.3% 61.7%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.72 37.0 4.22e-01 90.6% 64.1%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 47.0 3.81e-01 94.3% 40.4%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 58.0 5.40e-01 96.2% 81.5%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 57.0 5.38e-01 98.1% 82.5%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 57.0 5.36e-01 100.0% 82.8%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 56.0 5.31e-01 100.0% 82.8%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 53.0 5.15e-01 96.2% 83.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 42.0 3.83e-01 79.2% 50.7%
1wfqA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 53.0 4.83e-01 98.1% 80.8%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.61 43.0 2.62e-01 75.5% 46.2%
3go5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 52.0 4.81e-01 98.1% 85.7%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 41.0 4.07e-01 83.0% 66.7%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 39.0 3.46e-01 73.6% 46.2%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 50.0 3.11e-01 98.1% 25.8%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.59 44.0 3.40e-01 83.0% 60.9%
3wbiA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 49.0 3.64e-01 96.2% 67.6%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 51.0 4.50e-01 98.1% 93.7%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 50.0 4.33e-01 100.0% 67.0%
1tk7A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 34.0 3.91e-01 94.3% 83.8%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 39.0 3.51e-01 75.5% 48.1%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.57 50.0 4.30e-01 100.0% 76.7%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 3.51e-01 81.1% 51.0%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 40.0 2.78e-01 96.2% 22.2%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 49.0 3.86e-01 100.0% 62.9%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.57 39.0 2.58e-01 71.7% 18.7%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 2.97e-01 100.0% 17.5%
1k8kC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 2.99e-01 100.0% 18.9%
1x2jA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.57 47.0 3.03e-01 98.1% 25.2%
3clqA02 3.90.1710.10 Alpha Beta › Alpha-Beta Complex › Enterococcus faecalis V583 fold › Enterococcus faecalis V583 domain 0.56 48.0 3.46e-01 96.2% 91.8%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 47.0 3.05e-01 98.1% 25.4%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.56 49.0 3.73e-01 98.1% 62.8%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 45.0 3.78e-01 98.1% 66.7%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.55 48.0 3.00e-01 98.1% 25.3%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.22e-01 81.1% 49.6%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.55 49.0 3.57e-01 100.0% 54.6%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.43e-01 81.1% 46.9%
1xm8A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.55 42.0 2.71e-01 84.9% 29.1%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.54 45.0 3.64e-01 98.1% 68.2%
3o46A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.53 41.0 3.77e-01 96.2% 79.8%
1olmC01 3.40.525.10 Alpha Beta › 3-Layer(aba) Sandwich › Phosphatidylinositol Transfer Protein Sec14p › CRAL-TRIO lipid binding domain 0.53 41.0 2.61e-01 100.0% 15.9%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.52 38.0 3.19e-01 90.6% 45.6%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.51 39.0 3.45e-01 96.2% 96.8%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.07e-01 100.0% 84.0%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 40.0 2.97e-01 100.0% 94.4%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5023740 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 49.0 5.09e-01 75.5% 70.0%
4957409 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 47.0 4.83e-01 79.2% 66.0%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.71 46.0 4.12e-01 73.6% 48.0%
4593895 375.8.1.0 few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.70 35.0 4.23e-01 100.0% 100.0%
3464671 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.68 46.0 4.17e-01 71.7% 52.9%
4100221 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 60.0 5.59e-01 98.1% 81.5%
4358761 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.67 59.0 5.54e-01 98.1% 81.5%
4946166 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 56.0 5.37e-01 92.5% 83.3%
4483173 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 58.0 5.46e-01 98.1% 81.5%
4051852 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 59.0 5.51e-01 98.1% 81.5%
4433263 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 59.0 5.48e-01 98.1% 81.5%
4059146 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 59.0 5.50e-01 98.1% 81.5%
4399115 2.1.1.13 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.66 57.0 5.35e-01 96.2% 83.1%
4066623 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 58.0 5.56e-01 98.1% 88.3%
4425795 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 58.0 5.41e-01 98.1% 83.1%
4582456 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 58.0 5.27e-01 98.1% 77.1%
4434149 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 58.0 5.40e-01 98.1% 81.5%
4119533 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 57.0 5.55e-01 98.1% 88.3%
3581611 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.41e-01 75.5% 72.0%
3234981 633.23.1.4 alpha bundles › Bromodomain-like › Claudin › Claudin › Claudin_2 0.66 45.0 3.06e-01 73.6% 56.2%
4032291 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 57.0 5.36e-01 98.1% 81.5%
4161636 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 57.0 5.37e-01 98.1% 83.1%
2028019 4.1.1.136 beta barrels › SH3 › SH3 › SH3 › NMD_SH3 0.65 43.0 4.07e-01 73.6% 56.1%
4250239 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 58.0 5.45e-01 100.0% 83.1%
4252940 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 57.0 5.33e-01 98.1% 81.5%
3948516 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 56.0 5.26e-01 98.1% 84.6%
3317544 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 56.0 5.30e-01 98.1% 81.5%
3188732 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.65 46.0 4.17e-01 77.4% 57.3%
4039724 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 57.0 5.31e-01 98.1% 81.5%
4579534 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 57.0 5.39e-01 100.0% 81.5%
4184764 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.64 57.0 5.34e-01 98.1% 81.5%
4043601 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.64 58.0 5.39e-01 100.0% 81.5%
140391 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.64 57.0 5.16e-01 100.0% 74.6%
5028078 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.64 53.0 3.41e-01 96.2% 45.4%
4933213 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.64 47.0 4.37e-01 98.1% 61.4%
4167626 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.64 55.0 5.21e-01 98.1% 81.5%
4168836 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.64 55.0 5.04e-01 98.1% 80.0%
4976626 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.64 44.0 2.88e-01 88.7% 17.3%
4050524 2.1.1.10 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.63 55.0 5.13e-01 98.1% 81.5%
4978506 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.62 45.0 3.00e-01 88.7% 21.1%
3403344 386.1.1.4 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.62 41.0 4.00e-01 98.1% 61.7%
4045981 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 53.0 4.49e-01 98.1% 80.0%
3644493 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 43.0 2.59e-01 75.5% 42.3%
3204926 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.61 43.0 3.90e-01 73.6% 82.9%
4952130 3714.1.1.1 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.61 42.0 2.76e-01 88.7% 17.0%
3593008 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 51.0 3.15e-01 100.0% 88.8%
4113514 304.51.1.6 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cmr3 0.60 46.0 3.20e-01 88.7% 25.4%
3789879 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.20e-01 98.1% 68.6%
3738189 2.1.1.81 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_S1 0.59 50.0 4.18e-01 96.2% 92.6%
5035886 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.59 51.0 4.56e-01 98.1% 86.7%
5047657 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 4.06e-01 96.2% 70.9%
5058926 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.59 50.0 4.55e-01 98.1% 72.0%
3824503 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.57 48.0 3.09e-01 98.1% 27.1%
3191658 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.56 38.0 2.65e-01 71.7% 18.5%
3928962 4161.1.1.2 beta complex topology › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC N-terminal domain-like › MOSC_N 0.56 42.0 3.19e-01 88.7% 74.0%
4613954 4271.1.1.0 alpha complex topology › PriB N-terminal domain-like › PriB N-terminal domain-like › PriB N-terminal domain-like 0.55 39.0 2.67e-01 75.5% 46.4%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 45.0 3.98e-01 92.5% 82.5%
3243791 239.3.1.1 beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin 0.55 38.0 2.66e-01 100.0% 20.5%
3797728 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 45.0 3.91e-01 98.1% 58.8%
3646226 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.54 44.0 4.00e-01 98.1% 68.8%
3784098 2006.1.6.7 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › Sec23_trunk 0.54 37.0 2.46e-01 77.4% 38.7%
3570230 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.53 38.0 3.38e-01 83.0% 57.8%
3805156 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 45.0 3.63e-01 100.0% 56.4%
5013052 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 42.0 3.69e-01 98.1% 70.0%
5020208 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.78e-01 86.8% 84.0%
3454406 375.1.1.69 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 0.50 34.0 3.55e-01 94.3% 74.0%