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MN988558.1__QIG76917.1__EVC30_088__00088

Bact-Vir

MN988558.1__QIG76917.1__EVC30_088__00088

Identity

Accession:
MN988558 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-33
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4oevA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.68 54.0 3.51e-01 100.0% 20.0%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.06e-01 100.0% 56.1%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 3.75e-01 100.0% 50.5%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.63 49.0 3.94e-01 100.0% 50.7%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.54e-01 100.0% 43.5%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 3.72e-01 100.0% 50.6%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.69e-01 100.0% 48.4%
2mlgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.80e-01 100.0% 68.8%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 3.83e-01 100.0% 59.7%
2x49A02 3.40.5.40 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › FHIPEP family, domain 2 0.61 46.0 4.23e-01 100.0% 62.5%
1zkkB00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.61 46.0 3.11e-01 100.0% 23.6%
3lfkD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 3.41e-01 100.0% 39.1%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.15e-01 100.0% 35.0%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.45e-01 100.0% 44.6%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 43.0 3.30e-01 100.0% 55.4%
4c9yA00 1.10.10.1890 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ska1 microtubule binding domain-like 0.58 44.0 3.17e-01 100.0% 37.4%
1k6dB00 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.58 45.0 2.77e-01 100.0% 13.2%
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 43.0 3.72e-01 100.0% 47.8%
6v3pD01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 43.0 3.33e-01 100.0% 50.5%
2ahuA01 3.40.1080.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaconate Coenzyme A-transferase › Glutaconate Coenzyme A-transferase 0.58 44.0 2.71e-01 100.0% 15.4%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.58 44.0 2.81e-01 100.0% 21.9%
4gu4A01 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.57 40.0 3.76e-01 75.0% 48.8%
3bn0A00 3.30.1320.10 Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 0.57 41.0 3.10e-01 87.5% 46.3%
2l9dA00 3.30.70.2340 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Uncharacterised protein PF12112 family, DUF3579 0.56 40.0 3.11e-01 100.0% 50.0%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.56 45.0 2.98e-01 100.0% 27.1%
1ac5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 43.0 2.44e-01 100.0% 13.5%
2x24A02 2.40.460.10 Mainly Beta › Beta Barrel › ClpP/crotonase fold › Biotin dependent carboxylase carboxyltransferase 0.55 40.0 3.55e-01 100.0% 48.5%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 41.0 2.53e-01 90.6% 23.8%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.25e-01 100.0% 57.8%
1yfbA00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.55 42.0 3.65e-01 87.5% 59.6%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.55 42.0 3.42e-01 96.9% 62.0%
4kdyB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 39.0 3.04e-01 71.9% 25.0%
1dekA02 1.10.238.70 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.54 38.0 2.82e-01 93.8% 26.2%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.54 42.0 2.80e-01 100.0% 64.3%
3pgvA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.54 42.0 3.13e-01 100.0% 99.0%
2xzn800 3.30.63.20 Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › 0.54 39.0 3.13e-01 100.0% 49.5%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.53 39.0 3.03e-01 100.0% 54.5%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.42e-01 100.0% 79.7%
3dmgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.60e-01 90.6% 55.4%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.52 40.0 3.33e-01 100.0% 69.4%
2jtvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.32e-01 100.0% 56.9%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 2.93e-01 100.0% 62.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.09e-01 100.0% 56.7%
1ybeB01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.52 40.0 2.30e-01 100.0% 20.8%
4g84A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.51 38.0 2.20e-01 84.4% 49.8%
2innB00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.51 45.0 2.47e-01 100.0% 33.5%
2grvA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 36.0 2.42e-01 100.0% 16.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.51 37.0 2.77e-01 100.0% 42.4%
3r4cA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.50 38.0 2.89e-01 100.0% 99.0%
5koxA02 3.30.70.2450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.03e-01 96.9% 41.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990274 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.62 47.0 3.55e-01 100.0% 54.3%
3799929 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 3.21e-01 100.0% 35.4%
3708479 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 3.97e-01 100.0% 64.3%
4999183 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.60e-01 100.0% 50.5%
3349197 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.61 46.0 2.79e-01 87.5% 21.3%
3533128 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.60 47.0 3.43e-01 100.0% 60.9%
5080701 2003.1.5.445 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › GvpD_bR2 0.59 48.0 2.98e-01 100.0% 34.6%
4554473 601.7.2.1 alpha bundles › Four-helical up-and-down bundle › HEPN › HEPN domain in CRISPR-associated protein Csx1 › Csx1_HEPN 0.59 46.0 3.46e-01 96.9% 87.4%
4977499 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.31e-01 100.0% 46.7%
5083603 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.59 43.0 3.04e-01 100.0% 32.9%
3867816 101.1.2.506 alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 0.59 45.0 3.30e-01 100.0% 66.4%
4000154 242.3.1.1 a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.59 43.0 3.17e-01 100.0% 30.8%
4668974 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.24e-01 100.0% 62.5%
3641281 109.4.1.2665 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, TPR_7, PPR_3, E_motif 0.58 42.0 2.36e-01 87.5% 9.0%
3348687 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.58 41.0 2.91e-01 87.5% 34.6%
4987122 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 41.0 3.64e-01 96.9% 76.9%
3734711 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.57 43.0 2.35e-01 100.0% 4.1%
4986319 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 40.0 3.53e-01 75.0% 60.0%
2884795 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.57 44.0 3.94e-01 93.8% 88.2%
3780553 2484.1.1.15 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 0.57 42.0 2.64e-01 100.0% 12.9%
3382191 109.4.1.1254 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.57 40.0 2.36e-01 84.4% 15.1%
4992628 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.57 45.0 3.74e-01 87.5% 76.4%
5061423 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.56 42.0 2.47e-01 90.6% 64.6%
3993155 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.56 39.0 2.43e-01 87.5% 66.4%
3602750 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 46.0 2.78e-01 100.0% 24.6%
5058522 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 42.0 3.51e-01 84.4% 51.7%
3428211 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.56 40.0 2.29e-01 84.4% 18.7%
3369483 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.55 39.0 2.46e-01 90.6% 18.0%
3285274 241.11.1.1 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like › YjbR 0.55 42.0 3.09e-01 100.0% 30.4%
4967881 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.55 39.0 3.47e-01 84.4% 48.1%
4927156 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.20e-01 100.0% 56.0%
3314246 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.55 39.0 2.38e-01 90.6% 15.1%
3309917 109.4.1.2594 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, PPR_long, E_motif 0.55 42.0 2.30e-01 90.6% 6.7%
4982519 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 42.0 3.68e-01 87.5% 60.0%
4976918 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 40.0 3.22e-01 100.0% 56.7%
3996858 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.54 37.0 3.08e-01 78.1% 29.2%
4639978 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 41.0 3.50e-01 87.5% 56.4%
5001623 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 41.0 3.65e-01 87.5% 60.0%
3358972 1.1.7.120 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF7271 0.54 36.0 3.20e-01 100.0% 80.0%
3803650 109.4.1.1335 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, E_motif 0.54 37.0 2.07e-01 87.5% 7.2%
4992345 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 40.0 3.69e-01 87.5% 68.9%
5006749 2003.1.3.73 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › CoA_transf_3 0.53 42.0 2.48e-01 100.0% 22.8%
4969278 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 42.0 3.82e-01 90.6% 93.3%
3505182 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 38.0 3.07e-01 90.6% 33.8%
3248261 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 40.0 3.35e-01 100.0% 58.6%
4966339 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.53 40.0 3.34e-01 87.5% 50.0%
5031928 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 38.0 3.31e-01 84.4% 54.5%
3381691 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.52 37.0 2.25e-01 100.0% 9.7%
4955560 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 37.0 3.29e-01 87.5% 54.5%
5065458 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 38.0 3.22e-01 87.5% 50.0%
5076168 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 38.0 2.90e-01 87.5% 36.5%
4880378 205.1.1.35 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4+Fer4_7 0.51 36.0 3.00e-01 100.0% 44.7%
4941025 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.50 39.0 3.48e-01 90.6% 95.9%
3813988 109.4.1.1272 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.50 37.0 2.26e-01 87.5% 18.2%
3672097 109.4.1.1156 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › E_motif 0.50 38.0 2.61e-01 93.8% 26.4%
5027722 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 35.0 3.39e-01 87.5% 66.7%