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MN988558.1__QIG76940.1__EVC30_111__00111

Bact-Vir

MN988558.1__QIG76940.1__EVC30_111__00111

Identity

Accession:
MN988558 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rhizobium_phage_RHph_Y1_11

TaxID: 2509770

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-147
PDB
Domain cluster: rep: MW825358.1__QVD49350.1__LUCX_280__00280__D152-270
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14081.12 best DUF4262 67.6 1.80e-18 92.1% 99.2%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 35.0 4.10e-01 79.1% 77.1%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 37.0 4.00e-01 72.7% 78.1%
3f1zI00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 32.0 3.44e-01 79.9% 64.7%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.52 42.0 3.95e-01 83.5% 100.0%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.51 30.0 3.22e-01 72.7% 66.7%
1bcrA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 44.0 3.68e-01 97.8% 88.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
137904 642.1.1.1 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SUFU 0.70 64.0 5.85e-01 98.6% 94.0%
3968238 642.1.1.1 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SUFU 0.70 64.0 5.63e-01 99.3% 96.5%
3505293 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.69 59.0 5.26e-01 89.9% 86.3%
3963288 642.1.1.1 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SUFU 0.69 62.0 5.68e-01 96.4% 87.8%
3200639 642.1.1.0 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain 0.68 61.0 5.48e-01 97.1% 87.4%
3232139 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.67 62.0 5.11e-01 100.0% 85.0%
3622636 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.67 62.0 5.11e-01 100.0% 82.4%
3514938 213.1.1.6 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ 0.67 42.0 4.53e-01 95.7% 73.3%
3530245 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.66 61.0 5.15e-01 100.0% 81.3%
3938008 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.66 61.0 5.04e-01 100.0% 81.7%
4141727 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 35.0 4.03e-01 79.1% 70.5%
3477855 642.1.1.2 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › SARA_C 0.60 55.0 4.96e-01 100.0% 87.6%
3481228 642.1.1.0 ↗ a+b three layers › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain › Suppressor of Fused, N-terminal domain 0.60 55.0 4.95e-01 100.0% 87.1%
1678533 243.3.1.10 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.58 24.0 3.19e-01 77.0% 71.4%
3287183 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.57 42.0 4.10e-01 76.3% 85.3%
None — 0.55 45.0 2.79e-01 87.8% 83.9%
3941428 330.10.1.1 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.55 40.0 4.00e-01 74.8% 85.7%
3801624 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 32.0 3.65e-01 90.6% 82.0%
4014496 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.51 43.0 3.32e-01 92.8% 71.7%
3734046 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.51 42.0 3.14e-01 90.6% 56.7%
2429160 3887.2.1.1 ↗ a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.50 31.0 3.43e-01 77.0% 77.1%