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MN988558.1__QIG76980.1__EVC30_152__00151

Bact-Vir

MN988558.1__QIG76980.1__EVC30_152__00151

Identity

Accession:
MN988558 ↗
Kingdom:
phage

Quality

69.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-62
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.92 65.0 7.43e-01 73.8% 97.8%
4fsdA02 3.40.5.100 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.84 64.0 5.61e-01 80.3% 62.8%
2hvfA00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.71 45.0 4.83e-01 72.1% 76.9%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.69 48.0 4.92e-01 73.8% 86.2%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.68 50.0 4.94e-01 78.7% 78.8%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 53.0 3.89e-01 85.2% 46.9%
7tg5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 45.0 3.77e-01 78.7% 46.7%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 43.0 3.74e-01 75.4% 83.5%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 44.0 3.70e-01 77.0% 81.3%
6hfxA01 3.30.70.3040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 3.51e-01 70.5% 100.0%
3ewgA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.59 41.0 3.85e-01 75.4% 83.7%
3lp8A04 3.90.600.10 Alpha Beta › Alpha-Beta Complex › Glycinamide Ribonucleotide Synthetase; Chain A, domain 4 › Phosphoribosylglycinamide synthetase, C-terminal domain 0.58 41.0 3.73e-01 78.7% 95.7%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 42.0 2.74e-01 83.6% 74.1%
1bluA00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 45.0 4.26e-01 100.0% 98.8%
4qmgC01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 39.0 3.05e-01 88.5% 55.3%
1ni5A01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 35.0 2.53e-01 73.8% 76.2%
4ie5A01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.51 38.0 2.59e-01 83.6% 28.0%
1eljA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 35.0 2.62e-01 73.8% 67.4%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5009 4076.3.1.2 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › YqbF 0.90 66.0 7.30e-01 77.0% 95.9%
4956454 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 53.0 5.53e-01 75.4% 81.8%
3601134 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.73 47.0 4.53e-01 70.5% 57.1%
2543054 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.73 46.0 4.25e-01 70.5% 50.0%
4991614 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 49.0 5.12e-01 70.5% 78.2%
5083883 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.70 48.0 5.31e-01 73.8% 97.8%
4144346 4076.3.1.6 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › GINS_N 0.70 47.0 4.64e-01 70.5% 73.8%
4946969 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.69 48.0 5.16e-01 73.8% 100.0%
5010674 4076.3.1.11 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PF25865 0.67 46.0 4.79e-01 75.4% 80.0%
5001806 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.66 44.0 4.77e-01 70.5% 89.6%
4032281 268.2.1.1 a+b two layers › Sterol carrier protein-like › LytR-Cps2A-Psr (LCP) enzymes › LytR-Cps2A-Psr (LCP) enzymes › LytR_cpsA_psr 0.64 52.0 3.43e-01 91.8% 29.5%
5068408 4076.4.1.0 a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.63 44.0 4.76e-01 75.4% 100.0%
4083057 4076.3.1.0 a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 44.0 4.73e-01 73.8% 90.0%
4995103 304.17.1.2 a+b two layers › Alpha-beta plaits › N-utilization substance G protein NusG, N-terminal domain › N-utilization substance G protein NusG, N-terminal domain › Spt5-NGN 0.60 42.0 4.06e-01 75.4% 80.0%
3519123 304.169.1.3 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.57 45.0 4.00e-01 88.5% 70.0%
3635987 304.112.1.10 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › Med13_N 0.56 39.0 2.76e-01 75.4% 94.9%
2866954 304.169.1.3 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.54 44.0 4.00e-01 95.1% 79.5%
3564958 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.53 39.0 3.51e-01 82.0% 88.9%
4885769 2005.1.1.11 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.52 38.0 2.65e-01 80.3% 77.4%
D2 medium residues 74-129
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 5.20e-01 100.0% 58.1%
4wcgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 52.0 5.15e-01 100.0% 73.8%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 5.07e-01 100.0% 68.5%
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 4.50e-01 83.9% 58.1%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.65e-01 98.2% 57.6%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.13e-01 100.0% 68.8%
2cqnA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.64 54.0 4.98e-01 100.0% 74.0%
2i6xA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 52.0 4.89e-01 92.9% 81.7%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.64 53.0 4.62e-01 100.0% 94.7%
3bddD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.04e-01 96.4% 39.4%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.62 52.0 4.31e-01 94.6% 59.8%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 45.0 4.73e-01 100.0% 91.7%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 51.0 5.02e-01 100.0% 88.3%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 48.0 4.54e-01 96.4% 71.0%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.60 48.0 4.21e-01 100.0% 68.7%
6teyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.94e-01 91.1% 60.3%
2zpaA04 1.20.120.890 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › tRNA(Met) cytidine acetyltransferase, tail domain 0.58 39.0 3.01e-01 85.7% 28.1%
2ckwA04 1.20.960.20 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › 0.58 46.0 3.71e-01 98.2% 44.9%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 4.24e-01 92.9% 72.0%
3smvA02 1.10.150.750 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.57 44.0 4.12e-01 92.9% 89.6%
3bulA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.56 39.0 3.42e-01 83.9% 48.3%
1txuA02 1.20.1050.80 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › VPS9 domain 0.55 50.0 3.53e-01 100.0% 35.6%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.55 44.0 4.12e-01 100.0% 72.2%
4pu7A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 40.0 3.69e-01 78.6% 93.0%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 43.0 3.44e-01 100.0% 89.8%
5ja4D00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.53 37.0 2.73e-01 73.2% 55.0%
4qa9A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 42.0 2.65e-01 100.0% 62.1%
4hlyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.47e-01 92.9% 99.1%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 41.0 3.81e-01 96.4% 87.2%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 36.0 3.42e-01 75.0% 88.4%
2hkvA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.51 44.0 3.30e-01 96.4% 53.9%
2zg6A02 1.10.150.660 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.51 40.0 3.87e-01 98.2% 87.5%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.51 44.0 3.31e-01 96.4% 58.5%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 40.0 3.63e-01 92.9% 80.2%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2705 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.74 60.0 5.22e-01 100.0% 58.8%
5004487 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 52.0 5.67e-01 96.4% 95.6%
4941116 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 4.35e-01 100.0% 51.2%
5028122 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 56.0 4.30e-01 96.4% 38.5%
3994728 7094.1.1.3 alpha bundles › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › Paddle domain of mitochondrial dynamin › OPA1_C 0.67 57.0 4.36e-01 100.0% 42.9%
3369798 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.65 56.0 4.95e-01 100.0% 75.3%
4011519 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 55.0 5.46e-01 100.0% 95.0%
5027756 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 48.0 4.95e-01 96.4% 96.0%
3600574 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.62 52.0 3.80e-01 98.2% 33.3%
4028025 101.1.17.0 alpha arrays › HTH › HTH › FF domain 0.62 49.0 4.99e-01 96.4% 92.7%
3686953 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.61 51.0 4.84e-01 100.0% 78.6%
3169408 101.1.17.2 alpha arrays › HTH › HTH › FF domain › FF 0.60 51.0 4.82e-01 100.0% 81.4%
3191621 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.93e-01 98.2% 96.4%
5039847 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.60 47.0 4.81e-01 100.0% 96.4%
3679962 101.28.1.0 alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.59 48.0 4.86e-01 94.6% 98.2%
3373435 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.58 50.0 4.73e-01 100.0% 91.4%
3518638 101.1.2.132 alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.58 49.0 4.24e-01 100.0% 84.2%
3687407 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.57 47.0 4.50e-01 98.2% 100.0%
4011227 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.43e-01 98.2% 83.1%
4061700 101.1.1.312 alpha arrays › HTH › HTH › Three-helical HTH › Ustilago_mating, Homeobox_KN 0.55 43.0 3.32e-01 92.9% 46.2%
2774099 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.54 45.0 3.11e-01 100.0% 84.8%
4388318 161.1.1.1 alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW 0.53 40.0 2.82e-01 87.5% 25.6%
4158780 129.1.1.15 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › P5CR_dimer 0.53 37.0 2.96e-01 75.0% 36.7%
9879 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.53 42.0 2.90e-01 100.0% 77.8%
1320087 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.52 36.0 3.34e-01 71.4% 88.6%
3213582 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.52 40.0 2.87e-01 98.2% 26.5%