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MN988559.1__QIG77267.1__EVB32_299__00279

Bact-Vir

MN988559.1__QIG77267.1__EVB32_299__00279

Identity

Accession:
MN988559 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kleczkowskaviridae› Cuauhnahuacvirus› Rhizobium_phage_RHph_TM39

TaxID: 2509768

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-76
PDB
Domain cluster: rep: putative_nucleoside_deaminase__YP_009507199__Tunisvirus_fontaine2__1421067__D5-69
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00383.30 best dCMP_cyt_deam_1 40.6 2.70e-10 100.0% 57.8%
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w4lB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.89 84.0 6.36e-01 100.0% 49.7%
2hvwA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.86 80.0 6.19e-01 100.0% 49.7%
1vq2A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.86 81.0 5.95e-01 100.0% 52.6%
1cttA01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.73 58.0 4.54e-01 100.0% 41.7%
3pfeA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.56 47.0 3.24e-01 100.0% 72.7%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 37.0 3.05e-01 93.2% 35.4%
1x23B00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 40.0 3.28e-01 83.8% 94.1%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 46.0 3.52e-01 100.0% 70.0%
4r8oA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.51 38.0 3.58e-01 100.0% 63.3%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3245221 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.91 87.0 6.69e-01 100.0% 52.4%
3505350 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.90 85.0 6.32e-01 100.0% 47.3%
4943194 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.87 82.0 6.17e-01 100.0% 53.1%
11439 2492.1.1.1 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 0.85 62.0 6.75e-01 77.0% 90.3%
4943358 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.80 60.0 4.94e-01 100.0% 45.4%
3811811 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.71 56.0 4.29e-01 100.0% 37.6%
3238115 389.1.1.145 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › PF29138 0.66 45.0 4.95e-01 90.5% 94.5%
5056801 324.1.1.1 ↗ a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.60 40.0 3.46e-01 70.3% 51.2%
5018721 2484.1.1.49 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.56 37.0 2.90e-01 97.3% 33.8%
4971344 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 30.0 3.63e-01 73.0% 78.0%
3690425 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.55 44.0 2.98e-01 91.9% 94.4%
5054541 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.54 36.0 2.20e-01 97.3% 9.2%
3428560 263.1.1.1 ↗ a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.53 34.0 3.82e-01 97.3% 87.3%
4177936 2004.1.1.929 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › FliJ 0.53 36.0 2.33e-01 70.3% 16.5%
3216000 216.1.1.1 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.53 40.0 3.24e-01 83.8% 92.9%
3190239 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 45.0 3.25e-01 97.3% 77.7%
3686135 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 39.0 3.37e-01 81.1% 98.3%
3828153 387.1.5.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like 0.51 29.0 3.36e-01 78.4% 86.7%
3199598 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.51 40.0 2.80e-01 90.5% 24.1%