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MN988561.1__QIG77728.1__EVB64_141__00141
Bact-VirMN988561.1__QIG77728.1__EVB64_141__00141
Identity
- Accession:
- MN988561 ↗
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Kleczkowskaviridae›
Cuauhnahuacvirus›
Rhizobium_phage_RHph_TM61
TaxID: 2509572
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-125
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4qblE00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.74 | 65.0 | 5.55e-01 | 97.4% | 79.4% |
| 4qboA00 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.69 | 61.0 | 5.79e-01 | 98.7% | 90.2% |
| 1reqA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.69 | 61.0 | 4.80e-01 | 98.7% | 64.0% |
| 4dadA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 60.0 | 5.09e-01 | 100.0% | 80.5% |
| 1cdzA00 | 3.40.50.10190 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › BRCT domain | 0.67 | 52.0 | 4.90e-01 | 100.0% | 68.8% |
| 4cu5A00 | 3.40.50.12090 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 56.0 | 5.49e-01 | 96.2% | 83.5% |
| 3w4sA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.67 | 60.0 | 4.09e-01 | 100.0% | 78.8% |
| 7xlqD02 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.65 | 57.0 | 4.34e-01 | 98.7% | 83.7% |
| 3c2qA02 | 3.40.50.10690 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › putative lor/sdh protein like domains | 0.65 | 57.0 | 4.10e-01 | 100.0% | 80.8% |
| 3hw5B00 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.65 | 55.0 | 4.37e-01 | 100.0% | 60.6% |
| 6xzqA01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.65 | 55.0 | 4.41e-01 | 97.4% | 68.5% |
| 6aqoA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 52.0 | 3.82e-01 | 88.5% | 42.7% |
| 3breB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 56.0 | 4.65e-01 | 98.7% | 72.0% |
| 1k68A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 57.0 | 4.69e-01 | 100.0% | 85.0% |
| 2rirE01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 55.0 | 4.54e-01 | 100.0% | 86.1% |
| 8f5dA05 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.63 | 56.0 | 4.07e-01 | 100.0% | 88.7% |
| 1d4oA00 | 3.40.50.1220 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain | 0.63 | 56.0 | 4.36e-01 | 100.0% | 81.4% |
| 2pbzA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 45.0 | 4.48e-01 | 75.6% | 91.5% |
| 3khtA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 54.0 | 4.59e-01 | 97.4% | 84.8% |
| 1oxkB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 55.0 | 4.70e-01 | 98.7% | 85.9% |
| 4zylB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 54.0 | 4.51e-01 | 100.0% | 81.9% |
| 3mmzC00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.62 | 54.0 | 4.32e-01 | 100.0% | 74.7% |
| 1k66A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 54.0 | 4.39e-01 | 98.7% | 81.2% |
| 2mswA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 53.0 | 4.57e-01 | 98.7% | 78.4% |
| 3lufB01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 51.0 | 4.52e-01 | 98.7% | 85.8% |
| 3b2nA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 51.0 | 4.49e-01 | 98.7% | 89.2% |
| 6ontA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 50.0 | 4.42e-01 | 98.7% | 85.1% |
| 3hebA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 49.0 | 4.20e-01 | 98.7% | 85.9% |
| 7u7hA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.59 | 51.0 | 3.76e-01 | 100.0% | 62.3% |
| 2b8eB01 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.59 | 50.0 | 4.38e-01 | 100.0% | 84.7% |
| 6mjgA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.59 | 44.0 | 3.79e-01 | 79.5% | 59.5% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.58 | 48.0 | 3.74e-01 | 96.2% | 70.7% |
| 1p2fA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.57 | 48.0 | 4.27e-01 | 97.4% | 85.7% |
| 4bjhB01 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.57 | 49.0 | 4.06e-01 | 98.7% | 66.0% |
| 3hh1A00 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.54 | 41.0 | 3.76e-01 | 85.9% | 66.4% |
| 2g84A01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.54 | 43.0 | 3.37e-01 | 88.5% | 80.3% |
| 2r7kA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 41.0 | 3.75e-01 | 89.7% | 73.0% |
| 1p5jA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 41.0 | 3.92e-01 | 92.3% | 85.4% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027159 | 2008.1.1.86 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RAP | 0.80 | 73.0 | 6.34e-01 | 98.7% | 85.2% |
| 4940296 | 2008.1.1.121 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › MTES_1575 | 0.77 | 69.0 | 6.43e-01 | 98.7% | 92.6% |
| 2721398 | 2008.1.1.34 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Card1_endonuc | 0.76 | 68.0 | 5.73e-01 | 98.7% | 93.8% |
| 3289324 | 2007.6.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain | 0.67 | 60.0 | 4.96e-01 | 100.0% | 57.6% |
| 1030300 | 2003.6.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like | 0.67 | 60.0 | 4.09e-01 | 100.0% | 78.8% |
| 2753385 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.65 | 59.0 | 4.88e-01 | 98.7% | 75.9% |
| 5052869 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.65 | 58.0 | 4.99e-01 | 98.7% | 84.6% |
| 3937012 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.65 | 57.0 | 4.25e-01 | 100.0% | 82.4% |
| 4605048 | 2006.1.1.27 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › ISN1 | 0.65 | 56.0 | 4.02e-01 | 100.0% | 73.2% |
| 3311387 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.65 | 57.0 | 4.49e-01 | 98.7% | 74.5% |
| 3226298 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.65 | 56.0 | 4.11e-01 | 98.7% | 75.9% |
| 3663935 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 56.0 | 4.79e-01 | 100.0% | 82.2% |
| 3322262 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 56.0 | 4.42e-01 | 98.7% | 81.9% |
| 4269582 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.63 | 55.0 | 4.67e-01 | 98.7% | 78.5% |
| 4247760 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 54.0 | 4.52e-01 | 98.7% | 76.4% |
| 5038522 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 55.0 | 4.75e-01 | 98.7% | 85.0% |
| 4279021 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.62 | 55.0 | 4.65e-01 | 100.0% | 86.2% |
| 3966620 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.61 | 52.0 | 3.53e-01 | 98.7% | 31.7% |
| 4077509 | 7573.1.1.0 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like | 0.61 | 48.0 | 3.71e-01 | 87.2% | 70.0% |
| 5019016 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.61 | 52.0 | 4.61e-01 | 98.7% | 88.3% |
| 3728960 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.61 | 52.0 | 4.08e-01 | 98.7% | 74.9% |
| 4980713 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.60 | 53.0 | 4.47e-01 | 100.0% | 89.6% |
| 3729981 | 2003.1.1.148 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short, KR | 0.60 | 50.0 | 3.54e-01 | 98.7% | 73.1% |
| 1710397 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.60 | 51.0 | 4.16e-01 | 100.0% | 65.0% |
| 140201 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.60 | 52.0 | 4.59e-01 | 98.7% | 85.5% |
| 3978922 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 51.0 | 4.31e-01 | 97.4% | 80.0% |
| 4238346 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 51.0 | 4.15e-01 | 98.7% | 70.3% |
| 5083352 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 50.0 | 4.30e-01 | 97.4% | 80.0% |
| 134932 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 49.0 | 4.22e-01 | 98.7% | 87.1% |
| 5018153 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.59 | 50.0 | 4.10e-01 | 98.7% | 67.7% |
| 3823293 | 2006.1.4.3 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN | 0.59 | 50.0 | 4.06e-01 | 97.4% | 92.5% |
| 4153559 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.58 | 49.0 | 4.35e-01 | 100.0% | 89.2% |
| 3264062 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.58 | 49.0 | 4.21e-01 | 97.4% | 86.2% |
| 5076128 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.57 | 50.0 | 3.94e-01 | 98.7% | 85.9% |
| 4623576 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.55 | 47.0 | 4.01e-01 | 98.7% | 84.1% |
| 4980667 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.55 | 46.0 | 3.83e-01 | 97.4% | 75.3% |
| 3604127 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.54 | 41.0 | 3.09e-01 | 84.6% | 78.6% |
| 4148059 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.52 | 44.0 | 3.74e-01 | 100.0% | 69.7% |