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MT002873.2__QIG62281.1__X__00030

Bact-Vir

MT002873.2__QIG62281.1__X__00030

Identity

Accession:
MT002873 ↗
Kingdom:
phage

Quality

80.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tenacibaculum_phage_JQ

TaxID: 2712935

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-48
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.73 64.0 5.84e-01 100.0% 74.1%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 60.0 5.52e-01 97.7% 100.0%
1r77A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 57.0 4.45e-01 100.0% 74.7%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 57.0 5.00e-01 100.0% 86.4%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 55.0 4.83e-01 100.0% 82.9%
1i07A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 47.0 4.24e-01 83.7% 57.6%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 4.74e-01 93.0% 81.8%
4xttA00 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.59 48.0 4.04e-01 100.0% 81.2%
3hhwK01 1.10.3570.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like fold › Rhabdovirus nucleocapsid protein like domain 0.55 43.0 3.00e-01 100.0% 71.6%
4jz5A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 46.0 3.07e-01 100.0% 98.1%
2outA01 3.40.5.80 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.55 41.0 3.92e-01 100.0% 70.2%
5xyiU00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.54 44.0 3.55e-01 100.0% 87.6%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 45.0 2.71e-01 100.0% 41.3%
2v1oB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 2.93e-01 93.0% 43.9%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5066664 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.84 71.0 7.02e-01 100.0% 88.9%
4031645 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 65.0 6.21e-01 100.0% 80.0%
5042275 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.78 70.0 6.42e-01 100.0% 78.2%
5037502 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 69.0 6.35e-01 100.0% 79.6%
5035786 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.77 68.0 6.51e-01 100.0% 86.0%
4994655 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 68.0 6.48e-01 100.0% 86.0%
4956746 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.76 67.0 6.37e-01 97.7% 84.0%
4978275 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.76 68.0 6.25e-01 100.0% 78.2%
5028408 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.76 66.0 6.33e-01 97.7% 84.0%
4991671 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.76 68.0 6.46e-01 100.0% 88.0%
4932593 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.75 67.0 6.41e-01 100.0% 86.0%
4993373 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.75 67.0 5.98e-01 100.0% 71.7%
4932084 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.75 64.0 6.16e-01 100.0% 84.0%
4941835 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.74 66.0 5.88e-01 100.0% 71.7%
5055750 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 64.0 6.11e-01 100.0% 84.0%
4943471 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 66.0 6.05e-01 100.0% 80.0%
4230268 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.74 62.0 6.20e-01 100.0% 91.1%
4946969 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.74 63.0 6.07e-01 97.7% 84.0%
3785217 4076.3.1.3 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › SLD5_C 0.73 60.0 5.72e-01 100.0% 81.8%
5000883 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.73 64.0 6.12e-01 100.0% 86.0%
4983058 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.69 59.0 5.39e-01 100.0% 75.9%
1890284 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.68 57.0 5.31e-01 100.0% 74.1%
3988893 4.1.1.59 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_5 0.68 58.0 4.90e-01 100.0% 84.0%
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 55.0 4.99e-01 93.0% 91.7%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.67 57.0 4.30e-01 97.7% 54.3%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.66 55.0 4.82e-01 100.0% 84.3%
4207556 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.66 56.0 4.84e-01 100.0% 91.4%
3964224 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.65 53.0 5.16e-01 95.3% 82.0%
1826884 4.1.1.84 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_7 0.65 53.0 4.64e-01 100.0% 80.8%
3203069 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.62 48.0 2.90e-01 79.1% 12.2%
3477037 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 51.0 4.42e-01 100.0% 85.7%
3584071 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.59 47.0 3.57e-01 95.3% 43.5%
3503332 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.42e-01 100.0% 95.4%
3838574 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.57 43.0 4.18e-01 93.0% 100.0%
3632224 810.1.1.0 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) 0.57 47.0 3.57e-01 100.0% 60.9%
5065095 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.56 38.0 2.85e-01 72.1% 66.4%
3703942 304.126.1.1 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.54 41.0 3.36e-01 100.0% 66.7%
4040188 275.1.1.0 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase 0.53 40.0 3.78e-01 95.3% 86.7%
3239137 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 41.0 3.30e-01 93.0% 75.8%
3624904 389.2.1.0 ↗ few secondary structure elements › EGF-like › Serine protease inhibitors › Serine protease inhibitors 0.52 35.0 3.46e-01 79.1% 64.0%
3911415 2004.1.1.182 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_8 0.51 44.0 2.72e-01 100.0% 17.6%