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MT002873.2__QIG62329.1__X__00055

Bact-Vir

MT002873.2__QIG62329.1__X__00055

Identity

Accession:
MT002873 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.80 56.0 5.96e-01 81.7% 81.5%
1tj7A02 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.52 41.0 2.65e-01 85.0% 62.4%
2gduA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 41.0 2.58e-01 91.7% 37.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4015300 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 66.0 5.76e-01 91.7% 72.9%
3799902 376.1.1.22 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.71 42.0 4.73e-01 83.3% 80.0%
3744636 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.69 59.0 5.12e-01 93.3% 95.6%
5019399 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 45.0 4.69e-01 73.3% 100.0%
5033522 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 46.0 4.93e-01 80.0% 94.0%
3211971 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.64 41.0 4.64e-01 71.7% 100.0%
5049855 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.54 44.0 4.50e-01 98.3% 95.0%
4958102 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 39.0 3.86e-01 81.7% 78.5%
3300469 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.51 34.0 3.61e-01 83.3% 84.0%
D2 high residues 73-125
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.81 55.0 4.82e-01 94.3% 48.7%
1wimA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.79 62.0 5.07e-01 94.3% 47.9%
3goxA02 3.30.60.130 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.78 70.0 6.96e-01 96.2% 96.3%
2gviA03 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.74 45.0 5.34e-01 71.7% 97.1%
1zbdB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 64.0 4.72e-01 92.5% 40.7%
7yuiB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.72 53.0 4.51e-01 86.8% 47.7%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 55.0 3.97e-01 86.8% 31.2%
1t07A00 1.10.3880.10 Mainly Alpha › Orthogonal Bundle › YggX-like › Fe(II) trafficking protein YggX 0.69 54.0 4.68e-01 84.9% 58.0%
3goxA03 3.40.1800.10 Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases 0.63 53.0 4.61e-01 92.5% 69.1%
2luyA01 3.30.60.210 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Stc1 domain 0.62 49.0 4.80e-01 86.8% 93.0%
2m85A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 49.0 4.65e-01 90.6% 75.4%
1m5q102 3.30.310.60 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Like-Sm ribonucleoprotein, C-terminal domain 0.59 30.0 2.91e-01 79.2% 46.6%
2w0tA00 3.30.60.160 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 37.0 3.94e-01 84.9% 83.7%
4tmaJ00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.55 39.0 3.90e-01 100.0% 71.9%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.54 42.0 4.05e-01 88.7% 92.1%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 33.0 2.38e-01 100.0% 20.5%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.51 36.0 3.35e-01 75.5% 84.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4979944 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.94 68.0 7.77e-01 75.5% 100.0%
3879791 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.87 65.0 4.14e-01 81.1% 18.7%
3561303 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.86 65.0 4.49e-01 84.9% 26.1%
3438467 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.83 64.0 5.24e-01 86.8% 47.8%
3255227 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 63.0 5.08e-01 88.7% 45.3%
3684391 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 64.0 5.26e-01 88.7% 48.9%
3380766 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.82 65.0 5.17e-01 92.5% 45.0%
3326051 376.1.1.23 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.82 64.0 5.16e-01 90.6% 46.3%
1002459 378.1.1.13 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › His_Me_b4a2 0.82 69.0 7.01e-01 90.6% 98.1%
3683169 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.81 63.0 5.04e-01 90.6% 44.0%
3957054 377.1.1.87 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF4193 0.81 49.0 6.12e-01 71.7% 100.0%
3924159 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 61.0 5.03e-01 86.8% 47.8%
3623406 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.80 63.0 5.13e-01 90.6% 47.4%
3788517 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 63.0 4.64e-01 90.6% 34.6%
3876888 376.1.1.102 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26191 0.79 60.0 4.60e-01 88.7% 37.4%
3702126 376.1.1.27 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.79 59.0 5.00e-01 84.9% 49.4%
3343337 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 60.0 5.08e-01 86.8% 50.6%
3696220 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.79 62.0 4.76e-01 90.6% 39.5%
3430765 376.1.1.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.78 63.0 5.05e-01 96.2% 46.0%
3906952 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.78 62.0 4.90e-01 90.6% 43.3%
3837562 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 62.0 4.83e-01 96.2% 42.9%
3685606 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.78 52.0 4.86e-01 75.5% 56.9%
3869401 376.1.3.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE_2 0.77 60.0 4.37e-01 88.7% 32.1%
3636589 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 60.0 4.96e-01 92.5% 50.0%
8199 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 45.0 5.39e-01 71.7% 100.0%
3727710 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.74 63.0 6.22e-01 90.6% 92.7%
3564830 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.72 59.0 4.63e-01 92.5% 43.6%
4990133 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.71 52.0 5.14e-01 79.2% 74.5%
4442858 931.1.1.15 few secondary structure elements › Metallothionein › Metallothionein › Metallothionein › PF26927 0.71 45.0 5.15e-01 73.6% 97.1%
3606495 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.71 53.0 4.94e-01 83.0% 65.6%
3211002 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 54.0 4.97e-01 84.9% 88.6%
3301384 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 52.0 5.19e-01 81.1% 76.4%
3307915 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 50.0 4.63e-01 75.5% 66.2%
4016556 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.69 54.0 4.31e-01 86.8% 99.1%
5031996 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.69 50.0 5.01e-01 77.4% 76.4%
3253507 376.1.3.32 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom 0.69 59.0 5.32e-01 92.5% 78.6%
3301048 376.1.1.19 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RINGv 0.68 48.0 5.34e-01 79.2% 100.0%
4367584 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 39.0 2.30e-01 71.7% 6.6%
3733728 376.1.3.31 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-4CXXC_R1 0.67 53.0 4.67e-01 88.7% 95.0%
4466003 376.1.3.44 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Siva 0.66 47.0 4.45e-01 81.1% 61.5%
3636674 376.1.1.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.66 50.0 5.22e-01 81.1% 87.8%
3372361 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.65 46.0 5.05e-01 75.5% 100.0%
3534273 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.64 44.0 4.87e-01 75.5% 97.5%
4957710 377.1.1.31 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.62 45.0 4.79e-01 79.2% 91.1%
4263366 2004.1.1.219 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PriA_CRR 0.62 42.0 2.72e-01 71.7% 15.5%
4946657 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.62 47.0 4.44e-01 83.0% 93.8%
5011772 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.60 43.0 4.61e-01 79.2% 91.1%
5061253 376.1.3.97 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › Prok-RING_2 0.60 51.0 4.55e-01 100.0% 73.8%
3634154 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.60 47.0 4.38e-01 84.9% 80.0%
3415118 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.59 49.0 4.99e-01 100.0% 100.0%
4562058 377.1.1.31 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YHS 0.59 41.0 4.36e-01 75.5% 86.7%
3361724 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.57 42.0 3.59e-01 81.1% 47.8%
5001950 266.1.1.1 a+b two layers › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylate synthase/dCMP hydroxymethylase › Thymidylat_synt 0.57 45.0 2.87e-01 86.8% 94.4%
3300469 377.9.1.1 few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.57 41.0 4.19e-01 86.8% 84.0%
5036295 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.57 42.0 4.18e-01 83.0% 81.8%
3656812 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 44.0 3.67e-01 88.7% 68.0%
5074886 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.56 45.0 4.13e-01 88.7% 67.1%
3845445 377.1.1.16 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-FCS 0.56 41.0 4.36e-01 79.2% 91.1%
4025931 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 40.0 3.16e-01 83.0% 33.1%
3913312 377.1.1.50 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ZMYM4 0.55 42.0 4.52e-01 88.7% 100.0%
3411509 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.55 40.0 4.27e-01 79.2% 93.3%
3224881 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 40.0 3.10e-01 81.1% 31.9%
3680502 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 40.0 3.07e-01 83.0% 31.4%
3552232 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.55 39.0 3.02e-01 81.1% 30.1%
2878975 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.54 39.0 3.59e-01 81.1% 55.3%
3731209 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.54 39.0 3.27e-01 81.1% 42.0%
3557515 376.1.3.20 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_ash2p_like 0.54 41.0 3.91e-01 83.0% 70.8%
4023822 377.1.1.6 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.54 40.0 3.01e-01 86.8% 30.0%
3691420 376.1.4.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.52 41.0 3.79e-01 88.7% 71.4%
4979797 4033.1.1.3 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › HpaB_N 0.52 40.0 3.10e-01 92.5% 47.9%