←Back to structures

MT006234.1__QIG78043.1__BRUR0010001c01_00012__00012

Bact-Vir

MT006234.1__QIG78043.1__BRUR0010001c01_00012__00012

Identity

Accession:
MT006234 ↗
Kingdom:
phage

Quality

73.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bifidobacterium_phage_BlindUri1

TaxID: 2713249

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-101
PDB
Domain cluster: rep: pre3_saliva_scaffold_5_prodigal-single.1__X__X__00047__D207-294
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 38.0 2.66e-01 92.9% 18.0%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.67 32.0 3.60e-01 78.8% 57.9%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.64 37.0 4.26e-01 88.9% 80.0%
4o9dA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 39.0 2.58e-01 98.0% 15.6%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 33.0 2.69e-01 75.8% 26.5%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 38.0 2.62e-01 92.9% 20.1%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.59 28.0 3.44e-01 94.9% 70.5%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 42.0 2.87e-01 100.0% 20.4%
4i79A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 37.0 2.61e-01 92.9% 20.9%
8bxrA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.24e-01 81.8% 78.9%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 43.0 3.06e-01 85.9% 92.5%
1gl4B00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.92e-01 81.8% 78.7%
2joiA00 3.30.310.190 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 33.0 3.42e-01 100.0% 63.5%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.53 42.0 3.04e-01 84.8% 80.3%
7tzeA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 40.0 3.90e-01 81.8% 89.9%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 41.0 2.91e-01 85.9% 88.8%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 41.0 3.98e-01 83.8% 89.0%
4u7mA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.86e-01 81.8% 80.0%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.51 41.0 2.92e-01 86.9% 89.0%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.51 38.0 3.27e-01 80.8% 78.2%
7pjcA02 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.51 40.0 3.67e-01 100.0% 64.3%
2e9wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.89e-01 81.8% 79.4%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.37e-01 90.9% 58.7%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.51 38.0 3.90e-01 100.0% 84.0%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.50 39.0 3.23e-01 82.8% 100.0%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 39.0 2.88e-01 87.9% 99.7%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 41.0 3.70e-01 85.9% 99.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511321 5.1.4.298 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.78 40.0 2.43e-01 92.9% 8.1%
3254597 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 40.0 2.73e-01 92.9% 15.5%
3726231 5.1.4.497 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Cytochrom_D1, ANAPC4_WD40 0.71 39.0 2.56e-01 93.9% 13.9%
3630691 5.1.4.218 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT80_2nd 0.70 38.0 2.65e-01 93.9% 17.6%
4978331 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.70 40.0 4.65e-01 96.0% 80.0%
3434504 5.1.4.661 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st 0.70 39.0 2.68e-01 93.9% 17.1%
3929699 5.1.4.244 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_2nd 0.69 38.0 2.75e-01 94.9% 19.6%
3994625 5.1.4.30 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › LLGL 0.69 38.0 2.57e-01 97.0% 14.9%
3515797 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.69 38.0 2.69e-01 93.9% 17.8%
3620195 5.1.4.289 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.68 39.0 2.73e-01 93.9% 18.3%
3682049 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.68 38.0 2.71e-01 93.9% 18.6%
3782253 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.67 41.0 2.77e-01 93.9% 18.2%
3519934 5.1.4.48 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS1 0.67 38.0 2.88e-01 93.9% 23.5%
3275111 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.67 38.0 2.62e-01 97.0% 16.2%
3605600 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.66 41.0 2.64e-01 93.9% 15.1%
4029821 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.66 34.0 2.53e-01 76.8% 21.3%
3939467 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.65 37.0 3.55e-01 86.9% 47.5%
3488129 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.64 36.0 3.08e-01 75.8% 34.8%
3592465 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 39.0 2.68e-01 91.9% 19.4%
3715799 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 38.0 2.37e-01 96.0% 12.4%
3601043 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 39.0 2.52e-01 93.9% 14.3%
4618792 5.1.4.307 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.59 40.0 2.58e-01 93.9% 15.9%
3777718 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 38.0 2.25e-01 93.9% 7.9%
3210163 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.57 43.0 2.77e-01 93.9% 18.0%
3614108 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 39.0 2.54e-01 92.9% 16.9%
3265309 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.56 35.0 3.08e-01 89.9% 43.1%
3599654 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 42.0 2.44e-01 97.0% 9.3%
3613221 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 37.0 2.39e-01 96.0% 14.4%
3734891 227.1.1.4 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.54 42.0 3.61e-01 80.8% 100.0%
5002402 3153.1.1.0 ↗ a+b two layers › PipX › PipX › PipX 0.54 30.0 3.36e-01 84.8% 69.3%
5074321 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.53 43.0 3.97e-01 86.9% 100.0%
5028024 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.52 41.0 3.73e-01 82.8% 95.4%
3707477 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.54e-01 92.9% 19.2%
4311777 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.51 46.0 3.29e-01 97.0% 41.1%
3594736 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 37.0 2.29e-01 96.0% 12.4%
5039027 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.51 38.0 3.59e-01 78.8% 98.3%
3516953 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 46.0 3.46e-01 97.0% 50.2%