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MT006234.1__QIG78055.1__BRUR0010001c01_00024__00024
Bact-VirMT006234.1__QIG78055.1__BRUR0010001c01_00024__00024
Identity
- Accession:
- MT006234 ↗
- Kingdom:
- phage
Quality
66.0
mean pLDDT
Taxonomy
TaxID: 2713249
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-152
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04404.18 best | ERF | 39.2 | 9.80e-10 | 96.0% | 72.5% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cj1A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 34.0 | 3.41e-01 | 96.7% | 46.8% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.64 | 52.0 | 5.30e-01 | 96.7% | 86.5% |
| 4e19A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.60 | 29.0 | 3.06e-01 | 88.7% | 48.1% |
| 3bf2A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.55 | 41.0 | 4.47e-01 | 90.7% | 92.8% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 41.0 | 4.02e-01 | 90.7% | 75.9% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 39.0 | 4.06e-01 | 90.0% | 83.9% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 34.0 | 3.64e-01 | 82.7% | 75.0% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3658408 | 4325.1.1.13 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 | 0.68 | 34.0 | 4.59e-01 | 92.0% | 94.7% |
| 3613469 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.65 | 41.0 | 4.22e-01 | 75.3% | 66.4% |
| 3223921 | 2484.1.1.259 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26742 | 0.65 | 34.0 | 4.26e-01 | 95.3% | 83.3% |
| 3663874 | 2484.1.1.157 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF4371 | 0.63 | 33.0 | 2.40e-01 | 93.3% | 18.3% |
| 3481274 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 44.0 | 4.77e-01 | 91.3% | 96.8% |
| 5056705 | 1036.1.1.1 ↗ | a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 | 0.53 | 27.0 | 3.49e-01 | 94.0% | 88.7% |
| 4278326 | 7503.1.1.0 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain | 0.53 | 41.0 | 4.29e-01 | 91.3% | 91.1% |
| 1070223 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.52 | 39.0 | 4.06e-01 | 90.0% | 83.9% |
| 3675264 | 330.1.1.7 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsRBD2 | 0.51 | 43.0 | 3.99e-01 | 92.0% | 71.9% |
| 3839417 | 1118.1.1.0 ↗ | a+b complex topology › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain › Anchorless fibronectin/fibrinogen binding protein C-terminal domain | 0.50 | 24.0 | 2.74e-01 | 81.3% | 60.0% |
D2
high
residues 234-287
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.79 | 68.0 | 5.92e-01 | 98.1% | 70.2% |
| 1au7A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.71 | 57.0 | 5.26e-01 | 92.6% | 93.1% |
| 7n1nB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.70 | 56.0 | 5.44e-01 | 92.6% | 90.5% |
| 3vkgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.68 | 49.0 | 3.85e-01 | 75.9% | 45.5% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.68 | 53.0 | 5.12e-01 | 90.7% | 93.8% |
| 1x2lA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.67 | 56.0 | 4.91e-01 | 96.3% | 84.7% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.66 | 38.0 | 3.05e-01 | 83.3% | 28.4% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.66 | 56.0 | 4.86e-01 | 100.0% | 70.5% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 44.0 | 3.96e-01 | 75.9% | 51.4% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.65 | 52.0 | 4.84e-01 | 90.7% | 76.1% |
| 3mabA00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.65 | 45.0 | 3.89e-01 | 74.1% | 45.9% |
| 2l3nA00 | 1.10.1050.20 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › | 0.65 | 47.0 | 3.86e-01 | 100.0% | 41.3% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.65 | 43.0 | 3.90e-01 | 79.6% | 51.4% |
| 3zhiA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 50.0 | 4.64e-01 | 90.7% | 87.7% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.62 | 41.0 | 3.14e-01 | 72.2% | 29.6% |
| 3cxbA03 | 1.10.1740.30 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain | 0.61 | 50.0 | 4.46e-01 | 94.4% | 76.5% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.60 | 45.0 | 3.42e-01 | 85.2% | 60.5% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.60 | 42.0 | 3.60e-01 | 72.2% | 92.7% |
| 6ifsB02 | 1.10.8.100 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain | 0.60 | 49.0 | 4.55e-01 | 94.4% | 93.0% |
| 2fjrA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 48.0 | 4.43e-01 | 96.3% | 71.1% |
| 2qkwA00 | 1.20.1270.140 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto | 0.60 | 52.0 | 4.23e-01 | 98.1% | 84.2% |
| 2cfoA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 48.0 | 4.07e-01 | 100.0% | 64.4% |
| 4i0xG00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.59 | 41.0 | 3.81e-01 | 74.1% | 85.3% |
| 3b40A02 | 1.10.287.650 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain | 0.58 | 43.0 | 4.20e-01 | 100.0% | 72.4% |
| 5f1cA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.58 | 41.0 | 4.06e-01 | 79.6% | 69.5% |
| 1zq9A02 | 1.10.8.480 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.58 | 49.0 | 4.05e-01 | 94.4% | 88.8% |
| 3v76A03 | 1.10.8.260 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HI0933 insert domain-like | 0.58 | 46.0 | 4.44e-01 | 88.9% | 91.8% |
| 7b00A01 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.58 | 46.0 | 2.82e-01 | 100.0% | 73.1% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 38.0 | 3.36e-01 | 74.1% | 44.6% |
| 4oifB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 44.0 | 2.67e-01 | 88.9% | 14.1% |
| 3nz4B03 | 1.10.274.20 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 | 0.56 | 42.0 | 3.37e-01 | 79.6% | 42.3% |
| 6bfnB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 48.0 | 3.28e-01 | 98.1% | 37.6% |
| 2kg7B00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.54 | 40.0 | 3.30e-01 | 79.6% | 54.6% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 3.77e-01 | 90.7% | 80.0% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.53 | 40.0 | 3.80e-01 | 83.3% | 89.6% |
| 1zkeA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.30e-01 | 75.9% | 70.4% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.52 | 44.0 | 2.77e-01 | 100.0% | 94.5% |
| 2i7uA00 | 6.10.250.1010 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 36.0 | 3.54e-01 | 75.9% | 75.8% |
| 4ivfA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.51 | 42.0 | 3.27e-01 | 92.6% | 67.2% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3721853 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.71 | 52.0 | 4.77e-01 | 98.1% | 60.0% |
| 3758951 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.71 | 62.0 | 3.80e-01 | 100.0% | 18.2% |
| 3770218 | 101.1.4.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou | 0.71 | 59.0 | 4.92e-01 | 100.0% | 72.8% |
| 3864571 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.71 | 61.0 | 5.49e-01 | 98.1% | 80.0% |
| 2100896 | 1180.1.1.1 ↗ | alpha bundles › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › Flagellar biosynthetic protein FliP periplasmic domain › FliP | 0.70 | 60.0 | 5.66e-01 | 100.0% | 82.1% |
| 4602761 | 105.2.1.91 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C › SPICE | 0.65 | 54.0 | 4.05e-01 | 100.0% | 38.5% |
| 3388844 | 3755.3.1.427 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › ACP53EA | 0.64 | 41.0 | 3.43e-01 | 85.2% | 37.9% |
| 2622460 | 3396.1.1.1 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG_1_N | 0.63 | 43.0 | 3.96e-01 | 77.8% | 55.7% |
| 3541873 | 3755.3.1.297 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › KIF9 | 0.62 | 42.0 | 3.08e-01 | 70.4% | 100.0% |
| 3397827 | 150.3.1.32 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Unpaired | 0.61 | 51.0 | 3.67e-01 | 100.0% | 46.3% |
| 4942098 | 5042.1.1.1 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › CorA | 0.60 | 43.0 | 3.99e-01 | 75.9% | 69.1% |
| 3957973 | 150.5.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 | 0.60 | 42.0 | 3.41e-01 | 74.1% | 74.7% |
| 3799692 | 2484.1.1.50 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT | 0.60 | 44.0 | 2.57e-01 | 79.6% | 31.1% |
| 1293726 | 150.7.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE | 0.59 | 42.0 | 3.57e-01 | 74.1% | 89.4% |
| 3232414 | 632.7.1.25 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › PF27508 | 0.59 | 43.0 | 3.80e-01 | 75.9% | 64.0% |
| 4340199 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.58 | 45.0 | 3.32e-01 | 85.2% | 80.0% |
| 3598146 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.57 | 49.0 | 4.08e-01 | 100.0% | 96.0% |
| 4030705 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.57 | 49.0 | 2.96e-01 | 100.0% | 32.9% |
| 4010706 | 1.1.7.98 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25876 | 0.56 | 40.0 | 3.69e-01 | 75.9% | 72.9% |
| 3960409 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 42.0 | 3.36e-01 | 85.2% | 39.1% |
| 3971109 | 5086.1.1.85 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_AAEA_pHBA | 0.56 | 40.0 | 3.57e-01 | 75.9% | 58.7% |
| 3914045 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.55 | 46.0 | 3.40e-01 | 100.0% | 58.8% |
| 3704441 | 102.1.1.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like | 0.55 | 45.0 | 4.14e-01 | 92.6% | 82.9% |
| 3268674 | 568.1.1.0 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related | 0.54 | 44.0 | 3.68e-01 | 100.0% | 50.5% |
| 5012473 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 40.0 | 3.17e-01 | 79.6% | 41.8% |
| 3569033 | 3538.1.1.8 ↗ | extended segments › MerF › MerF › MerF › PF28754 | 0.54 | 38.0 | 3.84e-01 | 81.5% | 74.5% |
| 4803705 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 38.0 | 3.58e-01 | 75.9% | 62.1% |
| 3584248 | 130.1.2.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD | 0.53 | 46.0 | 3.29e-01 | 100.0% | 83.1% |
| 3229717 | 3470.1.1.29 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › COPIIcoated_ERV | 0.53 | 38.0 | 3.57e-01 | 79.6% | 68.6% |
| 3253767 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.52 | 41.0 | 2.93e-01 | 85.2% | 30.3% |
| 3786562 | 102.1.1.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_1 | 0.52 | 45.0 | 4.05e-01 | 100.0% | 81.3% |
| 3488885 | 102.1.1.16 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › SAM_2 | 0.52 | 44.0 | 4.11e-01 | 98.1% | 85.7% |