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MT006234.1__QIG78069.1__BRUR0010001c01_00038__00038
Bact-VirMT006234.1__QIG78069.1__BRUR0010001c01_00038__00038
Identity
- Accession:
- MT006234 ↗
- Kingdom:
- phage
Quality
68.1
mean pLDDT
Taxonomy
TaxID: 2713249
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-164
Domain cluster:
rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1at3A00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.71 | 62.0 | 5.32e-01 | 100.0% | 60.8% |
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.69 | 65.0 | 5.50e-01 | 100.0% | 67.6% |
| 1nrkA03 | 2.40.30.160 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.68 | 36.0 | 3.86e-01 | 97.9% | 58.2% |
| 1cmvB00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.68 | 59.0 | 5.13e-01 | 100.0% | 63.6% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 33.0 | 4.43e-01 | 100.0% | 100.0% |
| 1fjeB01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.63 | 35.0 | 4.32e-01 | 100.0% | 92.6% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.62 | 32.0 | 4.04e-01 | 87.4% | 86.1% |
| 2jheA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 32.0 | 4.06e-01 | 100.0% | 87.7% |
| 1kviA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 32.0 | 4.07e-01 | 100.0% | 89.9% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 30.0 | 3.79e-01 | 99.3% | 79.3% |
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 29.0 | 3.67e-01 | 100.0% | 76.5% |
| 1yy3A02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.58 | 29.0 | 3.36e-01 | 71.3% | 64.6% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.58 | 36.0 | 3.82e-01 | 96.5% | 68.8% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.58 | 33.0 | 3.56e-01 | 75.5% | 64.8% |
| 3nlcA01 | 3.30.70.2700 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 3.97e-01 | 100.0% | 100.0% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 32.0 | 3.63e-01 | 91.6% | 76.0% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.53 | 35.0 | 3.99e-01 | 96.5% | 91.4% |
| 5bmnA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.53 | 31.0 | 3.87e-01 | 93.7% | 98.8% |
| 5xgbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.53 | 36.0 | 3.36e-01 | 100.0% | 55.3% |
| 6swc801 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.52 | 30.0 | 3.32e-01 | 84.6% | 68.1% |
| 1vx7X00 | 3.30.1360.210 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.52 | 33.0 | 3.88e-01 | 97.2% | 92.8% |
| 1fhgA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 29.0 | 3.26e-01 | 97.2% | 71.6% |
| 5xamA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.00e-01 | 100.0% | 49.1% |
| 1dn0D02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 30.0 | 3.48e-01 | 97.2% | 83.0% |
| 4nmlA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 29.0 | 3.53e-01 | 92.3% | 87.8% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 28.0 | 3.47e-01 | 94.4% | 89.4% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.50 | 33.0 | 3.48e-01 | 95.8% | 74.6% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964948 | 1.1.16.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 | 0.85 | 70.0 | 7.47e-01 | 97.9% | 96.8% |
| 5083161 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.83 | 70.0 | 6.99e-01 | 90.9% | 86.2% |
| 3954964 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.82 | 76.0 | 7.63e-01 | 100.0% | 95.9% |
| 5039158 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.82 | 75.0 | 7.17e-01 | 95.1% | 93.8% |
| 5083920 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.79 | 73.0 | 7.38e-01 | 94.4% | 100.0% |
| 5003309 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.79 | 69.0 | 7.23e-01 | 97.2% | 99.2% |
| 3585229 | 50.1.1.2 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S77 | 0.79 | 73.0 | 7.42e-01 | 97.9% | 99.3% |
| 4995675 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.79 | 70.0 | 6.64e-01 | 93.0% | 83.6% |
| 3964748 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 48.0 | 5.58e-01 | 86.7% | 86.7% |
| 5038126 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.74 | 36.0 | 4.75e-01 | 100.0% | 86.7% |
| 3945977 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.73 | 69.0 | 6.56e-01 | 100.0% | 97.6% |
| 3166306 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.73 | 68.0 | 6.63e-01 | 97.9% | 96.7% |
| 5004197 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.73 | 49.0 | 5.86e-01 | 74.1% | 98.0% |
| 4215822 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.73 | 36.0 | 5.03e-01 | 95.8% | 97.1% |
| 3970319 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.72 | 38.0 | 4.73e-01 | 100.0% | 82.2% |
| 3602442 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.71 | 52.0 | 5.88e-01 | 90.9% | 98.2% |
| 788 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.71 | 62.0 | 5.32e-01 | 100.0% | 60.8% |
| 4513211 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.71 | 35.0 | 3.79e-01 | 87.4% | 55.8% |
| 27577 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.69 | 65.0 | 5.47e-01 | 100.0% | 65.4% |
| 4072484 | 1.1.8.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › YgfZ_barrel | 0.69 | 38.0 | 4.65e-01 | 100.0% | 84.4% |
| 1304358 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.69 | 63.0 | 5.38e-01 | 100.0% | 63.1% |
| 5036839 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.67 | 33.0 | 4.60e-01 | 100.0% | 97.1% |
| 5041711 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.66 | 33.0 | 4.52e-01 | 100.0% | 97.1% |
| 4157473 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 35.0 | 3.78e-01 | 87.4% | 60.8% |
| 3182090 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.63 | 34.0 | 4.56e-01 | 98.6% | 100.0% |
| 1150480 | 50.1.1.1 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S21 | 0.63 | 43.0 | 5.00e-01 | 73.4% | 96.1% |
| 3942221 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 33.0 | 4.29e-01 | 100.0% | 94.7% |
| 4975915 | 304.4.1.29 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg_3 | 0.62 | 35.0 | 4.29e-01 | 100.0% | 87.8% |
| 3256764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 39.0 | 4.07e-01 | 88.1% | 69.2% |
| 4006107 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.60 | 32.0 | 4.16e-01 | 100.0% | 96.0% |
| 3873803 | 327.11.2.27 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin | 0.59 | 34.0 | 4.11e-01 | 100.0% | 88.9% |
| 3970632 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.59 | 33.0 | 4.33e-01 | 99.3% | 100.0% |
| 4995243 | 3501.1.1.1 ↗ | a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 | 0.53 | 28.0 | 3.54e-01 | 94.4% | 92.0% |
| 4358407 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 37.0 | 4.13e-01 | 100.0% | 97.3% |
| 1325196 | 304.51.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_assoc | 0.51 | 38.0 | 4.00e-01 | 100.0% | 85.0% |
D2
high
residues 300-358
D3
medium
residues 365-382_414-491_607-631
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.76 | 71.0 | 6.64e-01 | 100.0% | 97.9% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.68 | 39.0 | 4.30e-01 | 95.9% | 69.8% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.66 | 40.0 | 3.87e-01 | 100.0% | 52.1% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 30.0 | 3.62e-01 | 81.8% | 65.4% |
| 3qkbA00 | 3.30.110.70 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B | 0.65 | 46.0 | 5.13e-01 | 100.0% | 93.6% |
| 3o4oB03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 35.0 | 3.73e-01 | 82.6% | 59.6% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.61 | 43.0 | 4.13e-01 | 86.0% | 61.5% |
| 2ednA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 34.0 | 3.46e-01 | 81.8% | 55.1% |
| 3onrJ00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.60 | 33.0 | 4.16e-01 | 83.5% | 92.6% |
| 1dr9A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 30.0 | 3.40e-01 | 91.7% | 60.0% |
| 2rf4C01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.60 | 38.0 | 4.29e-01 | 88.4% | 85.7% |
| 6gbsA02 | 3.30.428.10 | Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like | 0.59 | 37.0 | 3.05e-01 | 78.5% | 35.4% |
| 2nzcB00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.59 | 29.0 | 3.45e-01 | 82.6% | 67.9% |
| 3u83A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 31.0 | 3.34e-01 | 90.9% | 58.4% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 29.0 | 3.36e-01 | 92.6% | 67.5% |
| 1f0xA04 | 3.30.1370.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 | 0.57 | 32.0 | 3.67e-01 | 94.2% | 76.5% |
| 1y14D01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.57 | 33.0 | 3.99e-01 | 83.5% | 93.2% |
| 4of8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 29.0 | 3.11e-01 | 88.4% | 56.3% |
| 1y0hB00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 30.0 | 3.28e-01 | 81.0% | 62.2% |
| 6dw1A00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.55 | 35.0 | 2.95e-01 | 82.6% | 36.2% |
| 4pbdA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 32.0 | 3.43e-01 | 80.2% | 68.6% |
| 1k8iB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 28.0 | 3.11e-01 | 91.7% | 60.6% |
| 3qw9B00 | 2.60.40.4100 | Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-C domain | 0.52 | 39.0 | 3.47e-01 | 91.7% | 56.0% |
| 7d58G01 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.52 | 33.0 | 3.86e-01 | 81.8% | 100.0% |
| 1go3E02 | 3.30.1490.120 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain | 0.52 | 33.0 | 3.81e-01 | 83.5% | 95.1% |
| 1vk3A02 | 3.30.1330.10 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › PurM-like, N-terminal domain | 0.51 | 41.0 | 4.02e-01 | 90.9% | 76.3% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 27.0 | 2.66e-01 | 79.3% | 43.0% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 25.0 | 2.82e-01 | 74.4% | 57.8% |
| 1ej6A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 27.0 | 3.06e-01 | 81.8% | 65.3% |
| 3kxyJ00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 27.0 | 2.72e-01 | 79.3% | 44.2% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4241362 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.82 | 78.0 | 5.68e-01 | 100.0% | 86.8% |
| 3026399 | 3555.1.1.1 ↗ | a+b three layers › Major capsid protein GP7 › Major capsid protein GP7 › Major capsid protein GP7 › GP7 | 0.81 | 76.0 | 5.33e-01 | 100.0% | 57.6% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.79 | 74.0 | 5.34e-01 | 100.0% | 87.3% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.78 | 73.0 | 5.54e-01 | 100.0% | 86.0% |
| 1877546 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.78 | 73.0 | 5.33e-01 | 100.0% | 87.3% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.78 | 73.0 | 5.48e-01 | 100.0% | 94.9% |
| 2989356 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.77 | 72.0 | 5.31e-01 | 100.0% | 87.8% |
| 3965498 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.77 | 72.0 | 5.16e-01 | 100.0% | 87.7% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.77 | 72.0 | 5.41e-01 | 100.0% | 83.3% |
| 3963274 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.77 | 70.0 | 4.85e-01 | 96.7% | 92.3% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.76 | 71.0 | 5.18e-01 | 100.0% | 83.9% |
| 2989506 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.75 | 70.0 | 5.17e-01 | 100.0% | 87.8% |
| 2989340 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.75 | 70.0 | 5.06e-01 | 100.0% | 82.9% |
| 4929755 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.74 | 70.0 | 5.20e-01 | 100.0% | 84.0% |
| 4313471 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.73 | 68.0 | 4.96e-01 | 100.0% | 82.3% |
| 3942344 | 2485.3.1.19 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › PF30928 | 0.73 | 67.0 | 4.93e-01 | 100.0% | 85.5% |
| 3501742 | 2485.3.1.21 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phi29_MCP | 0.72 | 67.0 | 4.89e-01 | 100.0% | 89.7% |
| 4030972 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.72 | 41.0 | 4.18e-01 | 91.7% | 56.7% |
| 3977525 | 2485.3.1.4 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_P2 | 0.72 | 65.0 | 4.74e-01 | 100.0% | 82.9% |
| 4890673 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.72 | 68.0 | 4.73e-01 | 100.0% | 83.7% |
| 2842229 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.71 | 66.0 | 4.59e-01 | 100.0% | 86.6% |
| 5081698 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.69 | 64.0 | 4.68e-01 | 100.0% | 87.5% |
| 3905413 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.66 | 32.0 | 3.43e-01 | 85.1% | 52.4% |
| 3586352 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.66 | 51.0 | 5.40e-01 | 99.2% | 91.4% |
| 3906458 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.66 | 49.0 | 4.52e-01 | 99.2% | 62.0% |
| 3603036 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.65 | 61.0 | 4.70e-01 | 100.0% | 87.5% |
| 4031028 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 60.0 | 4.51e-01 | 100.0% | 78.2% |
| 3348724 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.64 | 35.0 | 3.71e-01 | 92.6% | 59.0% |
| 3965732 | 304.13.1.1 ↗ | a+b two layers › Alpha-beta plaits › Hypothetical protein VC0424 › Hypothetical protein VC0424 › RraB | 0.64 | 31.0 | 3.42e-01 | 81.0% | 54.0% |
| 3966645 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.63 | 42.0 | 4.19e-01 | 90.1% | 64.8% |
| 3482574 | 872.3.1.0 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like | 0.63 | 46.0 | 4.80e-01 | 99.2% | 82.5% |
| 3880411 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.63 | 32.0 | 3.58e-01 | 81.8% | 61.0% |
| 3489664 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.62 | 40.0 | 4.04e-01 | 81.0% | 65.0% |
| 3970813 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.61 | 33.0 | 3.67e-01 | 83.5% | 66.0% |
| 3889641 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.60 | 29.0 | 3.13e-01 | 84.3% | 51.4% |
| 3916836 | 11.1.1.108 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 | 0.60 | 29.0 | 3.39e-01 | 90.9% | 63.5% |
| 3992388 | 872.3.1.5 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 | 0.59 | 48.0 | 4.77e-01 | 100.0% | 84.0% |
| 3261996 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.59 | 32.0 | 3.09e-01 | 91.7% | 45.9% |
| 3275694 | 872.3.1.6 ↗ | a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_3 | 0.59 | 44.0 | 4.78e-01 | 100.0% | 96.0% |
| 4479215 | 11.1.1.97 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set | 0.59 | 33.0 | 3.32e-01 | 83.5% | 55.0% |
| 3560523 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.57 | 31.0 | 3.33e-01 | 91.7% | 60.0% |
| 3173110 | 147.1.1.0 ↗ | alpha arrays › Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex › Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex › Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex | 0.55 | 40.0 | 4.10e-01 | 91.7% | 77.5% |
| 4969785 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 39.0 | 3.27e-01 | 75.2% | 76.7% |
| 4475474 | 11.1.1.639 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERG_Ig-like | 0.53 | 31.0 | 2.74e-01 | 83.5% | 37.4% |
| 5055225 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.52 | 34.0 | 4.05e-01 | 87.6% | 100.0% |
| 3344504 | 387.1.5.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like | 0.52 | 28.0 | 3.69e-01 | 98.3% | 98.4% |
| 1921523 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.50 | 39.0 | 3.96e-01 | 90.1% | 84.0% |
| 3785425 | 872.1.1.1 ↗ | a+b two layers › Dodecin subunit-like › Flavin-binding protein dodecin-like › Flavin-binding protein dodecin-like › SHS2_Rpb7-N | 0.50 | 38.0 | 4.02e-01 | 90.1% | 90.0% |
D4
medium
residues 492-606_632-645
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.77 | 60.0 | 6.57e-01 | 88.4% | 100.0% |
| 3bjqA00 | 3.90.1690.10 | Alpha Beta › Alpha-Beta Complex › phage-related protein like fold › phage-related protein like domain | 0.71 | 61.0 | 4.64e-01 | 93.0% | 78.7% |
| 3dktA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.70 | 49.0 | 5.64e-01 | 89.1% | 97.9% |
| 7mh2A01 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.69 | 49.0 | 5.61e-01 | 83.7% | 100.0% |
| 3c1aA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 37.0 | 3.57e-01 | 98.4% | 63.4% |
| 1hyuA04 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 32.0 | 3.70e-01 | 79.1% | 86.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952452 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 63.0 | 4.74e-01 | 91.5% | 53.2% |
| 2651377 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.73 | 68.0 | 5.08e-01 | 100.0% | 53.9% |
| 5083079 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.71 | 61.0 | 4.50e-01 | 91.5% | 65.8% |
| 5081487 | 2485.3.1.10 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF5309 | 0.71 | 61.0 | 4.72e-01 | 92.2% | 85.3% |
| 4815223 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.70 | 59.0 | 5.00e-01 | 89.1% | 73.4% |
| 4991535 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.70 | 59.0 | 4.69e-01 | 88.4% | 54.7% |
| 5083777 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 64.0 | 4.79e-01 | 98.4% | 80.0% |
| 194954 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.70 | 60.0 | 4.85e-01 | 91.5% | 79.2% |
| 3946670 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.70 | 64.0 | 4.97e-01 | 100.0% | 56.7% |
| 4955362 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.67 | 57.0 | 4.66e-01 | 90.7% | 81.2% |
| 2553816 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.67 | 56.0 | 4.42e-01 | 89.9% | 50.2% |
| 4873245 | 2485.3.1.2 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Linocin_M18 | 0.67 | 52.0 | 5.26e-01 | 82.2% | 100.0% |
| 4661423 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.66 | 42.0 | 5.00e-01 | 83.7% | 95.3% |
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.66 | 57.0 | 4.40e-01 | 93.0% | 75.4% |
| 4031028 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.66 | 61.0 | 4.67e-01 | 100.0% | 55.7% |
| 5056874 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.65 | 38.0 | 4.15e-01 | 83.7% | 68.8% |
| 3590713 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.64 | 41.0 | 3.84e-01 | 83.7% | 52.5% |
| 4889260 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.63 | 49.0 | 3.89e-01 | 82.9% | 47.9% |
| 4528694 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.63 | 42.0 | 4.27e-01 | 84.5% | 67.7% |
| 4101982 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.62 | 36.0 | 3.28e-01 | 83.7% | 41.7% |
| 4956373 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.61 | 41.0 | 4.24e-01 | 84.5% | 73.3% |
| 4409990 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 48.0 | 4.53e-01 | 82.9% | 87.3% |
| 4408770 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 47.0 | 4.49e-01 | 82.9% | 85.3% |
| 4399848 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 47.0 | 4.36e-01 | 83.7% | 95.2% |
| 4484870 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.59 | 47.0 | 4.51e-01 | 82.9% | 84.8% |
| 4265507 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.58 | 46.0 | 4.35e-01 | 82.2% | 87.3% |
| 5082900 | 298.4.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E | 0.56 | 38.0 | 3.97e-01 | 83.7% | 74.2% |
| 4305203 | 301.13.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › DegV | 0.56 | 36.0 | 3.78e-01 | 73.6% | 70.0% |
| 5082591 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.55 | 48.0 | 3.58e-01 | 100.0% | 49.0% |