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MT006236.1__QIG78147.1__BIHU0010003c01_00028__00028

Bact-Vir

MT006236.1__QIG78147.1__BIHU0010003c01_00028__00028

Identity

Accession:
MT006236 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-101
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.77 48.0 3.96e-01 70.2% 38.0%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.70 49.0 3.07e-01 74.5% 36.7%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 49.0 3.02e-01 74.5% 38.8%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.69 49.0 3.32e-01 76.6% 22.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.69 45.0 2.99e-01 76.6% 17.0%
1xdiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 48.0 3.50e-01 74.5% 47.9%
4iv9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 48.0 3.00e-01 76.6% 33.1%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 50.0 3.59e-01 78.7% 65.1%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 48.0 3.11e-01 74.5% 38.5%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 47.0 2.82e-01 74.5% 27.0%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 48.0 3.02e-01 76.6% 52.3%
3ng7X01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 48.0 3.09e-01 76.6% 46.6%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 45.0 3.79e-01 70.2% 68.4%
5ttjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 48.0 3.05e-01 76.6% 45.7%
1hyuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 48.0 3.16e-01 76.6% 40.7%
1w4tA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.66 43.0 2.92e-01 83.0% 18.0%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 46.0 3.93e-01 74.5% 61.3%
1ye8A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 40.0 2.75e-01 78.7% 17.0%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 46.0 2.68e-01 74.5% 12.8%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.65 47.0 3.26e-01 78.7% 90.8%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 46.0 2.72e-01 76.6% 29.6%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 45.0 3.05e-01 74.5% 34.3%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 43.0 3.27e-01 70.2% 46.4%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 46.0 2.84e-01 76.6% 40.9%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 45.0 3.08e-01 76.6% 22.9%
1vlaA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.62 39.0 4.08e-01 89.4% 71.4%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.62 44.0 2.74e-01 76.6% 73.5%
2vqrA01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.62 43.0 2.52e-01 76.6% 9.4%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 41.0 3.12e-01 72.3% 42.3%
2r9zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 3.17e-01 74.5% 49.2%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 2.98e-01 95.7% 41.2%
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 44.0 2.63e-01 80.9% 63.6%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.59 42.0 3.02e-01 74.5% 39.1%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.58 43.0 2.86e-01 80.9% 26.2%
2cmgA01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.57 35.0 3.43e-01 74.5% 51.0%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.31e-01 80.9% 41.3%
3a8uX01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 44.0 3.05e-01 85.1% 82.5%
2vvlG01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 51.0 3.15e-01 97.9% 58.6%
3oxhA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 38.0 2.81e-01 74.5% 26.3%
6i18A04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 37.0 2.92e-01 72.3% 41.1%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 36.0 3.11e-01 76.6% 38.7%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.02e-01 78.7% 35.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992786 11.1.1.1176 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 0.75 52.0 3.10e-01 72.3% 16.7%
3634181 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.75 52.0 2.98e-01 74.5% 39.9%
4980465 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 53.0 4.30e-01 91.5% 41.1%
4511759 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.73 52.0 2.97e-01 74.5% 29.4%
5051602 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.73 51.0 2.95e-01 74.5% 28.7%
4948974 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.72 51.0 3.52e-01 74.5% 49.3%
2429435 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.71 50.0 3.28e-01 74.5% 65.0%
4133121 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.71 50.0 2.81e-01 74.5% 25.3%
4872412 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.71 50.0 3.33e-01 74.5% 70.8%
3720390 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.70 50.0 2.82e-01 74.5% 26.4%
4346261 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.70 49.0 2.94e-01 74.5% 31.9%
4366041 244.1.1.18 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding-like 0.70 49.0 2.85e-01 74.5% 27.7%
5033675 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.70 51.0 2.93e-01 76.6% 28.3%
3721597 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.70 51.0 3.06e-01 76.6% 42.1%
4672377 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.70 49.0 3.01e-01 74.5% 40.0%
9237 2003.1.2.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.70 49.0 3.31e-01 74.5% 66.7%
4323062 2003.1.2.99 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 0.69 50.0 2.94e-01 76.6% 28.9%
3643996 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.69 51.0 2.88e-01 76.6% 44.7%
3726123 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.69 50.0 2.86e-01 76.6% 31.4%
4451049 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.69 50.0 2.82e-01 76.6% 26.7%
4180221 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.69 50.0 2.79e-01 76.6% 46.6%
None 0.69 48.0 2.92e-01 74.5% 32.8%
4198510 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.69 48.0 2.74e-01 74.5% 25.6%
4248008 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.69 50.0 2.84e-01 76.6% 27.0%
4016710 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.69 50.0 2.87e-01 76.6% 30.3%
5074676 2003.1.3.3 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_2 0.68 49.0 3.26e-01 76.6% 42.8%
4086531 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.68 50.0 2.83e-01 76.6% 27.0%
3280838 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.68 49.0 2.82e-01 76.6% 28.2%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.67 48.0 3.67e-01 74.5% 67.0%
4018697 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.67 48.0 2.89e-01 76.6% 32.4%
3442219 2003.1.2.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase 0.67 47.0 2.74e-01 74.5% 58.2%
3838855 2003.1.3.8 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.67 47.0 2.69e-01 74.5% 40.2%
3947030 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.67 48.0 2.80e-01 76.6% 30.7%
5034371 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.67 48.0 2.78e-01 76.6% 27.5%
4183628 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 48.0 2.79e-01 76.6% 30.7%
3961922 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.66 48.0 2.93e-01 76.6% 43.7%
4939428 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.66 51.0 4.63e-01 80.9% 73.3%
3981713 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.66 48.0 2.93e-01 76.6% 41.9%
5016260 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.66 51.0 4.64e-01 80.9% 69.5%
3028534 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.66 47.0 3.17e-01 76.6% 67.1%
4357143 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.66 47.0 2.72e-01 74.5% 41.9%
3430041 5.1.10.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.65 46.0 3.54e-01 74.5% 49.5%
3386519 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.65 47.0 2.76e-01 76.6% 37.5%
4037872 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.65 47.0 2.91e-01 76.6% 45.1%
3867302 5.1.4.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.65 57.0 3.32e-01 97.9% 20.8%
3314585 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.64 46.0 2.84e-01 74.5% 20.6%
5752 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.64 47.0 3.22e-01 78.7% 90.8%
4117361 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.64 46.0 2.68e-01 76.6% 30.5%
4998118 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.63 48.0 4.26e-01 80.9% 67.7%
3634343 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.60 49.0 2.78e-01 89.4% 84.1%
3345838 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.59 51.0 3.09e-01 97.9% 23.9%
3604573 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.58 50.0 2.74e-01 93.6% 49.1%
3743878 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.56 45.0 2.64e-01 93.6% 27.7%
3168537 109.4.1.1794 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.54 47.0 2.79e-01 100.0% 68.1%
D2 medium residues 122-206
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.50 35.0 2.62e-01 72.9% 54.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621570 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.65 37.0 2.44e-01 76.5% 13.0%
3715297 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.59 35.0 3.44e-01 71.8% 53.7%
4586306 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.57 39.0 2.45e-01 70.6% 97.5%
4471334 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 39.0 2.49e-01 71.8% 73.5%
4980465 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.94e-01 74.1% 100.0%
4549004 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.55 38.0 2.48e-01 71.8% 77.4%
3265666 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 36.0 2.22e-01 77.6% 11.1%
3580852 5.1.4.308 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, LLGL 0.52 36.0 2.25e-01 71.8% 27.1%
4283788 2003.1.2.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.51 38.0 2.35e-01 80.0% 70.9%
4399722 1013.1.1.2 beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD40 0.51 36.0 2.32e-01 76.5% 43.3%