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MT006236.1__QIG78167.1__BIHU0010003c01_00048__00048
Bact-VirMT006236.1__QIG78167.1__BIHU0010003c01_00048__00048
Identity
- Accession:
- MT006236 ↗
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Taxonomy
TaxID: 2713247
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 155-199
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yfkA02 | 3.40.50.1370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase | 0.76 | 59.0 | 3.87e-01 | 86.7% | 56.6% |
| 1b5tA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.73 | 61.0 | 3.74e-01 | 93.3% | 86.2% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.68 | 46.0 | 3.23e-01 | 71.1% | 23.6% |
| 2g47A04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.66 | 56.0 | 3.57e-01 | 97.8% | 33.8% |
| 3mzkB03 | 1.20.58.940 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 45.0 | 3.97e-01 | 75.6% | 48.6% |
| 2qgaB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.64 | 50.0 | 4.00e-01 | 100.0% | 61.4% |
| 3sk9A00 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.63 | 53.0 | 3.40e-01 | 100.0% | 82.2% |
| 7eu1A02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.57 | 48.0 | 3.46e-01 | 95.6% | 91.0% |
| 3nynA03 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.57 | 43.0 | 3.76e-01 | 91.1% | 90.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4020452 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.80 | 70.0 | 4.11e-01 | 95.6% | 25.1% |
| 3495903 | 4106.1.1.0 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack | 0.75 | 56.0 | 4.29e-01 | 82.2% | 35.2% |
| 3309133 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.66 | 56.0 | 4.49e-01 | 97.8% | 49.4% |
| 3392007 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 49.0 | 3.15e-01 | 100.0% | 40.4% |
D2
high
residues 207-303
Domain cluster:
rep: MN204492.1__QEQ93551.1__SEA_GIRLPOWER_52__00052__D152-236
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5c68A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 39.0 | 3.74e-01 | 77.3% | 54.1% |
| 6fgcA01 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.57 | 43.0 | 3.52e-01 | 80.4% | 79.0% |
| 3ghjA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.56 | 35.0 | 3.36e-01 | 78.4% | 52.6% |
| 3kzwA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.56 | 41.0 | 3.52e-01 | 78.4% | 70.9% |
| 3zi1A02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 35.0 | 3.11e-01 | 78.4% | 43.4% |
| 2vdrB02 | 2.60.40.1510 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 | 0.54 | 38.0 | 3.22e-01 | 71.1% | 72.5% |
| 4p02B04 | 3.30.379.30 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › | 0.53 | 40.0 | 3.38e-01 | 79.4% | 67.3% |
| 4lqbA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 34.0 | 3.17e-01 | 86.6% | 49.2% |
| 5kvsA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 40.0 | 3.39e-01 | 82.5% | 85.8% |
| 1yzyA02 | 3.40.980.20 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › Four-carbon acid sugar kinase, nucleotide binding domain | 0.52 | 39.0 | 3.19e-01 | 79.4% | 91.0% |
| 7arcC01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.51 | 37.0 | 3.39e-01 | 76.3% | 57.0% |
| 2ijaA00 | 3.30.2140.20 | Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › | 0.51 | 37.0 | 2.70e-01 | 76.3% | 37.7% |
| 3oa4A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 37.0 | 3.41e-01 | 78.4% | 71.4% |
| 6bu2A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 38.0 | 3.35e-01 | 80.4% | 66.0% |
| 1gxsB02 | 3.40.50.11320 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 34.0 | 3.48e-01 | 75.3% | 69.4% |
| 3rmuA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 36.0 | 3.30e-01 | 77.3% | 54.5% |
| 3gaaB00 | 3.40.50.10900 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit | 0.51 | 41.0 | 3.21e-01 | 93.8% | 88.4% |
| 3p8aA02 | 2.60.40.4320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 31.0 | 3.20e-01 | 73.2% | 63.3% |
| 1kw3B02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 37.0 | 3.24e-01 | 78.4% | 59.7% |
| 5nkkF01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 44.0 | 3.31e-01 | 97.9% | 60.1% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 33.0 | 3.20e-01 | 75.3% | 59.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1886700 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.63 | 37.0 | 4.62e-01 | 76.3% | 98.2% |
| 5084062 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.61 | 30.0 | 2.99e-01 | 78.4% | 42.9% |
| 3361190 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.58 | 33.0 | 3.69e-01 | 74.2% | 72.2% |
| 4647833 | 2004.1.1.171 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Smg8_Smg9 | 0.58 | 51.0 | 3.49e-01 | 99.0% | 54.7% |
| 134195 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.58 | 34.0 | 4.22e-01 | 70.1% | 98.2% |
| 4149038 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.54 | 43.0 | 3.54e-01 | 87.6% | 79.9% |
| 3483288 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 38.0 | 3.45e-01 | 73.2% | 76.2% |
| 4946163 | 3414.1.1.12 ↗ | beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein › NMD3 | 0.54 | 43.0 | 4.07e-01 | 85.6% | 97.4% |
| 3255282 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.53 | 48.0 | 3.74e-01 | 99.0% | 80.5% |
| 5040911 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.53 | 38.0 | 3.19e-01 | 77.3% | 41.7% |
| 5014027 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.53 | 36.0 | 3.74e-01 | 71.1% | 74.4% |
| 3498638 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 39.0 | 3.48e-01 | 78.4% | 82.9% |
| 3780896 | 2011.2.1.3 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro | 0.53 | 41.0 | 3.62e-01 | 84.5% | 86.0% |
| 3784616 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 33.0 | 3.94e-01 | 72.2% | 100.0% |
| 5069234 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 34.0 | 2.82e-01 | 75.3% | 36.4% |
| 3730655 | 2003.1.2.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_oxidored, NAD_binding_8 | 0.52 | 42.0 | 2.78e-01 | 89.7% | 94.3% |
| 3739127 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.52 | 34.0 | 2.97e-01 | 74.2% | 45.7% |
| 3439186 | 2007.5.1.20 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase,PMR5N | 0.51 | 40.0 | 2.72e-01 | 85.6% | 68.4% |
| 5055333 | 4272.1.1.1 ↗ | a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa | 0.51 | 35.0 | 2.95e-01 | 70.1% | 57.6% |
| 1160884 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.51 | 34.0 | 3.48e-01 | 70.1% | 71.3% |
| 5068747 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.51 | 35.0 | 3.90e-01 | 78.4% | 92.0% |
| 3405271 | 2011.2.1.7 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 | 0.50 | 44.0 | 3.30e-01 | 96.9% | 96.3% |
| 4162604 | 7589.1.1.2 ↗ | a/b three-layered sandwiches › YgbK-like › YgbK-like › YgbK-like › NBD_C | 0.50 | 38.0 | 3.12e-01 | 80.4% | 91.1% |
| 3929338 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 38.0 | 3.84e-01 | 82.5% | 99.0% |
D3
medium
residues 28-79
Domain cluster:
representative