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MT006237.1__QIG78211.1__BIBE0010001c01_00025__00025

Bact-Vir

MT006237.1__QIG78211.1__BIBE0010001c01_00025__00025

Identity

Accession:
MT006237 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-56
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.77 65.0 4.06e-01 96.1% 87.9%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 65.0 4.91e-01 100.0% 44.4%
2kbiA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.74 63.0 5.50e-01 98.0% 69.6%
4cvnA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 52.0 3.58e-01 82.4% 35.8%
1sseB00 1.10.238.100 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › YAP1 redox domain. Chain B 0.67 59.0 4.98e-01 100.0% 64.0%
7qjnA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 59.0 3.73e-01 100.0% 82.1%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.67 53.0 3.83e-01 88.2% 68.0%
2wb6A00 3.90.1150.90 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.67 47.0 3.59e-01 76.5% 33.3%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 52.0 3.42e-01 100.0% 19.6%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.89e-01 80.4% 55.6%
5e37A02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.63 49.0 4.21e-01 88.2% 60.5%
6lpfA01 1.10.730.20 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › 0.63 45.0 3.18e-01 84.3% 23.9%
3g5sA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 53.0 3.36e-01 100.0% 21.1%
2fsjA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 44.0 3.25e-01 76.5% 65.2%
2qenA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.05e-01 80.4% 75.7%
1p4xA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 3.81e-01 94.1% 49.6%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.25e-01 82.4% 34.8%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 43.0 3.29e-01 82.4% 36.4%
1yuiA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 35.0 3.50e-01 100.0% 55.6%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.58 36.0 3.45e-01 100.0% 53.3%
4byfC01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.57 49.0 4.16e-01 100.0% 66.3%
3h4sE00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 49.0 4.04e-01 100.0% 58.3%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.54e-01 82.4% 65.2%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.47e-01 82.4% 50.5%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 42.0 3.61e-01 84.3% 69.3%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.55e-01 82.4% 53.5%
2pexA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 43.0 3.26e-01 88.2% 39.0%
2bl0C01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 4.22e-01 100.0% 70.7%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.30e-01 82.4% 51.5%
3na8A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 46.0 2.88e-01 98.0% 68.0%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.89e-01 98.0% 67.5%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.53 45.0 3.27e-01 100.0% 44.9%
2mhhA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 3.66e-01 100.0% 56.2%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.62e-01 88.2% 74.4%
5dqpB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.52 37.0 2.26e-01 76.5% 26.5%
1mw9X02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.52 42.0 3.07e-01 96.1% 43.6%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.45e-01 88.2% 67.1%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.56e-01 94.1% 75.0%
3wfdB00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.51 42.0 2.51e-01 100.0% 22.0%
4byfA01 1.20.5.4820 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 40.0 3.55e-01 100.0% 78.9%
6qdjA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 36.0 3.32e-01 96.1% 53.9%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.51 41.0 3.13e-01 100.0% 35.1%
1g8xA06 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 44.0 2.73e-01 100.0% 21.9%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.44e-01 94.1% 66.7%
3ddlA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 40.0 2.70e-01 100.0% 90.1%
3e3rA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 43.0 3.51e-01 100.0% 62.6%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.50 41.0 2.96e-01 100.0% 95.6%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027627 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.87 80.0 7.83e-01 100.0% 98.2%
3953197 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.82 73.0 5.89e-01 100.0% 56.8%
3589675 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.79 68.0 6.84e-01 96.1% 100.0%
3693848 101.1.9.77 alpha arrays › HTH › HTH › Putative DNA-binding domain › PAP1 0.77 66.0 6.30e-01 94.1% 93.3%
4950846 101.1.9.16 alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.77 64.0 6.54e-01 92.2% 98.0%
None 0.77 65.0 4.00e-01 96.1% 76.8%
4021723 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.77 68.0 5.54e-01 100.0% 63.2%
3195578 105.1.1.0 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain 0.76 64.0 4.65e-01 92.2% 40.7%
4928510 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.76 64.0 4.04e-01 96.1% 85.9%
3210018 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.75 65.0 5.18e-01 100.0% 57.1%
4255519 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.74 62.0 3.78e-01 96.1% 75.3%
4936732 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.74 62.0 3.76e-01 96.1% 71.1%
5011990 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.73 61.0 3.87e-01 94.1% 19.6%
4604028 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.73 60.0 4.65e-01 98.0% 42.4%
3205121 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.73 62.0 5.41e-01 98.0% 73.8%
3173849 101.1.9.77 alpha arrays › HTH › HTH › Putative DNA-binding domain › PAP1 0.71 63.0 5.99e-01 100.0% 91.7%
3590852 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.71 59.0 4.98e-01 100.0% 58.9%
2876157 101.1.9.105 alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.70 59.0 5.86e-01 100.0% 98.1%
3607656 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 57.0 4.74e-01 96.1% 56.8%
3587522 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 58.0 5.33e-01 100.0% 81.4%
3709334 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.69 55.0 4.61e-01 94.1% 55.8%
4769503 3786.1.1.0 0.67 59.0 4.98e-01 100.0% 64.0%
3407437 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.67 55.0 4.46e-01 100.0% 52.2%
4441682 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.66 58.0 3.47e-01 100.0% 14.6%
3837457 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.64 45.0 4.19e-01 76.5% 60.0%
3895660 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.63 52.0 4.74e-01 100.0% 69.3%
4261739 3068.2.1.1 a+b complex topology › Flagellar protein FlgA N-terminal domain-like › RNase J C-terminal domain › RNase J C-terminal domain › RNase_J_C 0.63 51.0 4.11e-01 96.1% 65.5%
4141722 605.1.1.289 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF26892 0.62 51.0 4.07e-01 90.2% 52.0%
3387184 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 51.0 3.19e-01 98.0% 16.2%
None 0.62 52.0 3.28e-01 100.0% 20.0%
3579672 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.61 48.0 4.77e-01 94.1% 87.3%
3643933 101.1.2.303 alpha arrays › HTH › HTH › winged helix domain › RPC5 0.61 43.0 4.04e-01 76.5% 60.0%
4019703 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.61 49.0 3.48e-01 94.1% 52.0%
5058466 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 3.83e-01 96.1% 41.8%
None 0.60 51.0 3.35e-01 100.0% 25.5%
4181610 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 46.0 3.65e-01 90.2% 49.6%
4024141 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 3.06e-01 88.2% 40.0%
5002415 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.57 45.0 3.56e-01 88.2% 49.1%
3173158 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 4.13e-01 96.1% 78.0%
5049180 140.1.1.13 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1 0.56 47.0 3.47e-01 100.0% 35.0%
5009738 1144.1.1.1 beta sandwiches › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Hydantoinase_B 0.56 40.0 2.76e-01 80.4% 22.9%
3403940 377.1.1.18 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › zf-AD 0.56 45.0 4.05e-01 100.0% 71.2%
3289373 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.56 46.0 3.45e-01 100.0% 40.0%
3279254 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 45.0 3.89e-01 94.1% 67.1%
3968802 3831.1.1.1 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI 0.55 47.0 3.86e-01 100.0% 76.5%
4979216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.14e-01 70.6% 61.1%
3946198 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 41.0 3.60e-01 88.2% 68.2%
4990500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.80e-01 100.0% 71.1%
4973149 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.54 42.0 2.55e-01 86.3% 73.3%
4371313 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 41.0 3.47e-01 88.2% 61.1%
4948727 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.54 44.0 4.05e-01 96.1% 77.1%
4953298 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.53 44.0 3.32e-01 96.1% 41.5%
3342447 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 2.45e-01 96.1% 7.2%
3421957 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 41.0 3.58e-01 92.2% 56.8%
3690356 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.52 46.0 4.06e-01 100.0% 69.3%
3604659 1144.1.1.1 beta sandwiches › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Apc (acetophenone carboxylase) beta subunit C-terminal domain › Hydantoinase_B 0.52 38.0 2.62e-01 82.4% 22.5%
3287927 3601.1.1.0 alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain 0.52 41.0 3.20e-01 100.0% 37.1%
3691089 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.12e-01 98.0% 57.1%
3826771 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.52 42.0 3.27e-01 96.1% 48.0%
3442533 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.52 42.0 3.30e-01 96.1% 56.7%
3819614 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 40.0 3.63e-01 90.2% 65.3%
5058140 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.51 43.0 3.58e-01 100.0% 71.0%
3825507 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 42.0 2.47e-01 100.0% 33.5%
4075710 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.51 43.0 3.47e-01 100.0% 50.0%
5030054 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.34e-01 98.0% 47.3%
3213629 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.51 39.0 2.41e-01 84.3% 90.9%
3568354 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 35.0 3.15e-01 78.4% 68.2%
3968396 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.50 38.0 3.31e-01 88.2% 68.9%
3815453 101.1.2.396 alpha arrays › HTH › HTH › winged helix domain › WHD_ROQ1 0.50 43.0 3.63e-01 100.0% 63.3%
None 0.50 43.0 2.50e-01 98.0% 11.0%