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MT006237.1__QIG78238.1__BIBE0010001c01_00052__00052

Bact-Vir

MT006237.1__QIG78238.1__BIBE0010001c01_00052__00052

Identity

Accession:
MT006237 ↗
Kingdom:
phage

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bifidobacterium_phage_BigBern1

TaxID: 2713246

Cluster

View cluster (247 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 38-115
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.68 50.0 5.06e-01 94.9% 77.2%
1xe1A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 50.0 4.74e-01 97.4% 69.2%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.61 53.0 4.52e-01 96.2% 94.4%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 51.0 4.36e-01 98.7% 65.0%
2i4kA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 33.0 2.86e-01 100.0% 35.2%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 47.0 4.02e-01 93.6% 94.4%
2gbsA00 3.10.590.10 Alpha Beta › Roll › ph1033 like fold › ph1033 like domains 0.55 48.0 3.98e-01 100.0% 59.3%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 30.0 3.34e-01 96.2% 69.0%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.53 44.0 3.59e-01 93.6% 63.7%
3tx8A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.30e-01 73.1% 54.4%
3lidA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 43.0 3.70e-01 96.2% 82.8%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 44.0 4.11e-01 94.9% 100.0%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.52 33.0 3.64e-01 73.1% 82.0%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 28.0 3.41e-01 87.2% 84.0%
3mh9A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.51 34.0 2.57e-01 100.0% 25.9%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3511361 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 54.0 5.70e-01 96.2% 95.7%
1871771 1.1.5.43 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MrkH_YcgR_like 0.65 48.0 4.36e-01 100.0% 56.8%
3702149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 56.0 4.48e-01 100.0% 60.0%
3795831 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 48.0 5.03e-01 100.0% 97.1%
3535347 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 54.0 4.79e-01 100.0% 80.9%
5001586 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 48.0 4.62e-01 100.0% 74.4%
4400928 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.59 50.0 4.33e-01 100.0% 59.2%
3516283 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.59 48.0 5.03e-01 97.4% 100.0%
3252646 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.59 53.0 4.34e-01 100.0% 62.1%
4426297 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.57 50.0 4.26e-01 100.0% 95.4%
5078822 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.55 48.0 4.28e-01 100.0% 85.2%
3510772 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.55 49.0 3.82e-01 100.0% 45.7%
3978531 223.1.1.58 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.55 47.0 3.81e-01 96.2% 60.6%
3968876 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 46.0 4.16e-01 92.3% 91.4%
3970689 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 46.0 3.99e-01 96.2% 74.4%
4541933 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.54 46.0 3.68e-01 96.2% 55.6%
3512547 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 47.0 3.65e-01 100.0% 44.4%
4026425 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.53 44.0 3.65e-01 100.0% 50.3%
4950605 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 44.0 3.80e-01 93.6% 83.2%
3942222 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.53 45.0 4.00e-01 96.2% 90.4%
4928030 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 43.0 3.75e-01 91.0% 76.7%
4379531 223.1.1.41 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.52 44.0 3.37e-01 96.2% 49.2%
3967508 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.52 43.0 3.82e-01 92.3% 87.0%
4961858 1.1.9.3 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › EVE 0.52 44.0 3.66e-01 100.0% 87.3%
4962837 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 43.0 3.93e-01 96.2% 85.5%
3589938 223.1.1.59 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ArlS_N 0.51 42.0 3.36e-01 93.6% 44.1%
3489059 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 3.79e-01 96.2% 85.8%