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MT024859.1__QIN93632.1__SEA_DUMPSTERDUDE_44__00044

Bact-Vir

MT024859.1__QIN93632.1__SEA_DUMPSTERDUDE_44__00044

Identity

Accession:
MT024859 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 165-185_197-266
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v5yA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 48.0 4.70e-01 96.7% 71.1%
1qg3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 47.0 4.57e-01 96.7% 67.3%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.65 30.0 3.59e-01 96.7% 63.1%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.63 38.0 3.93e-01 96.7% 63.2%
4hljA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 45.0 4.20e-01 96.7% 61.6%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.61 34.0 3.47e-01 100.0% 56.7%
6x3aA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 47.0 4.54e-01 96.7% 73.1%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 39.0 3.60e-01 86.8% 49.6%
3pv2A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 38.0 3.91e-01 95.6% 67.0%
1vwxS01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.59 40.0 4.38e-01 81.3% 91.5%
6rptC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 46.0 4.36e-01 96.7% 70.5%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.72e-01 96.7% 91.5%
2ebfX01 3.10.670.10 Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. 0.57 41.0 3.25e-01 75.8% 42.0%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.57 45.0 4.12e-01 85.7% 63.4%
3h5nD02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 41.0 3.03e-01 75.8% 87.8%
6u7iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.03e-01 96.7% 71.7%
4d7pA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.55 48.0 4.74e-01 96.7% 97.9%
1dn0D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.08e-01 95.6% 76.6%
1l9mA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 46.0 4.02e-01 96.7% 61.3%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.54 38.0 3.81e-01 96.7% 72.0%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.53 46.0 4.44e-01 96.7% 95.2%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.53 46.0 4.43e-01 96.7% 85.8%
4o5lL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.84e-01 96.7% 69.2%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 29.0 3.44e-01 90.1% 82.1%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 41.0 4.36e-01 89.0% 97.5%
4a4aA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 42.0 3.67e-01 85.7% 93.3%
3up6A02 2.60.40.3380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.82e-01 100.0% 87.2%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.04e-01 96.7% 78.1%
2vzsA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.03e-01 96.7% 74.8%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 38.0 3.58e-01 83.5% 69.5%
4fk5A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 40.0 2.81e-01 86.8% 87.6%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4216863 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 5.06e-01 90.1% 87.1%
4942818 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.63 44.0 3.85e-01 80.2% 47.9%
3579397 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 46.0 4.41e-01 96.7% 69.5%
2106284 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.61 42.0 4.67e-01 83.5% 98.5%
3252089 4139.1.1.1 a+b two layers › AMMECR1-like › AMMECR1-like › AMMECR1-like › AMMECR1 0.60 53.0 4.80e-01 97.8% 96.0%
3399011 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.59 52.0 4.44e-01 96.7% 77.2%
3511415 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.59 47.0 3.99e-01 85.7% 63.3%
3892842 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.59 39.0 4.35e-01 79.1% 93.8%
5059975 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 45.0 4.33e-01 96.7% 72.4%
3408263 11.1.1.822 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF229 0.58 41.0 4.09e-01 96.7% 72.6%
3486023 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 45.0 4.27e-01 96.7% 70.0%
3225752 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 45.0 3.60e-01 85.7% 91.1%
5083247 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 4.04e-01 96.7% 68.3%
4945418 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 48.0 4.15e-01 96.7% 60.0%
3508713 382.1.1.25 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › YjeJ 0.56 44.0 4.02e-01 84.6% 70.0%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 45.0 3.81e-01 87.9% 80.0%
3729534 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.55 42.0 3.61e-01 81.3% 51.0%
3915206 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.55 45.0 3.66e-01 90.1% 75.4%
4936297 304.48.1.32 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.55 44.0 3.61e-01 89.0% 85.1%
4397552 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 37.0 3.37e-01 96.7% 50.4%
3491868 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.54 47.0 4.22e-01 100.0% 81.5%
3929121 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.54 36.0 3.37e-01 82.4% 53.9%
3364460 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.54 43.0 3.72e-01 96.7% 55.2%
3482256 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 4.32e-01 98.9% 77.5%
5018130 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 46.0 4.12e-01 96.7% 86.9%
4940074 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 4.10e-01 93.4% 82.1%
4937355 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.06e-01 96.7% 74.6%
5018082 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.20e-01 96.7% 85.2%
3936599 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 40.0 3.47e-01 100.0% 52.4%
5005563 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 4.19e-01 94.5% 87.3%
5040390 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 44.0 3.92e-01 96.7% 65.4%
3420779 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.51 40.0 3.45e-01 87.9% 82.5%
3515326 10.10.1.0 beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) 0.51 44.0 3.95e-01 100.0% 68.9%
5060440 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 4.19e-01 96.7% 93.6%
3205720 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.87e-01 96.7% 68.9%
3217566 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.74e-01 87.9% 69.2%
4025395 10.13.1.1 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.51 35.0 2.92e-01 83.5% 41.2%
3917353 11.1.1.375 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD 0.50 45.0 2.72e-01 100.0% 45.6%
5076799 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.97e-01 95.6% 87.8%
3429729 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.50 40.0 3.20e-01 94.5% 41.2%
D2 medium residues 1-162_267-332
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.67 30.0 4.54e-01 78.5% 100.0%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.64 28.0 3.73e-01 82.0% 72.5%
3wa5B00 2.60.120.1690 Mainly Beta › Sandwich › Jelly Rolls › 0.63 26.0 3.54e-01 87.3% 70.2%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 36.0 4.53e-01 96.9% 98.6%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 34.0 4.33e-01 96.1% 100.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 37.0 4.32e-01 72.8% 91.3%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 37.0 4.20e-01 97.4% 90.7%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 34.0 4.18e-01 96.5% 100.0%
3w81A01 2.60.40.1500 Mainly Beta › Sandwich › Immunoglobulin-like › Glycosyl hydrolase domain; family 39 0.52 25.0 2.86e-01 97.8% 58.2%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 35.0 4.18e-01 97.8% 99.4%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 23.0 3.21e-01 72.4% 84.4%
2lf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 35.0 3.89e-01 97.8% 89.7%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275260 331.4.1.6 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › DEPDC5_CTD 0.66 28.0 4.24e-01 70.2% 93.7%
4926998 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 21.0 2.87e-01 97.8% 54.2%
3962319 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.62 33.0 4.07e-01 84.2% 79.3%
4956579 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 42.0 4.96e-01 70.6% 100.0%
2130817 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.59 37.0 4.10e-01 87.7% 76.9%
3210170 331.2.1.1 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.59 39.0 4.62e-01 73.2% 95.0%
3494434 3435.1.1.8 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › DEPDC5_CTD 0.56 33.0 4.14e-01 86.4% 96.3%
5047219 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 33.0 3.94e-01 97.4% 88.7%
143630 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.54 37.0 4.27e-01 97.8% 94.5%
3749143 243.3.1.20 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › AKAP28 0.52 28.0 3.76e-01 72.4% 95.2%
5048993 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 28.0 3.59e-01 86.4% 88.5%
3272413 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.51 28.0 3.59e-01 92.5% 88.9%