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MT024868.1__QIN94386.1__SEA_ABBA_57__00057
Bact-VirMT024868.1__QIN94386.1__SEA_ABBA_57__00057
Identity
- Accession:
- MT024868 ↗
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Berryhillviridae›
Ayohtrevirus›
Arthrobacter_phage_Abba
TaxID: 2713256
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-84
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.86 | 60.0 | 5.22e-01 | 71.6% | 66.7% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.76 | 48.0 | 5.09e-01 | 84.0% | 73.2% |
| 1gaxA05 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.75 | 53.0 | 5.54e-01 | 75.3% | 79.5% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.74 | 51.0 | 4.64e-01 | 71.6% | 56.6% |
| 2v0pA00 | 1.25.40.540 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family | 0.72 | 53.0 | 3.85e-01 | 92.6% | 28.9% |
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.72 | 49.0 | 4.93e-01 | 77.8% | 70.4% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.70 | 54.0 | 4.88e-01 | 81.5% | 68.9% |
| 2y39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.67 | 54.0 | 4.84e-01 | 85.2% | 63.6% |
| 1st6A02 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.67 | 53.0 | 3.83e-01 | 86.4% | 70.8% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 51.0 | 4.30e-01 | 87.7% | 49.3% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 38.0 | 4.04e-01 | 70.4% | 64.9% |
| 1o5hA00 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.62 | 53.0 | 4.01e-01 | 95.1% | 63.5% |
| 1hqoA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 54.0 | 4.67e-01 | 100.0% | 79.4% |
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 48.0 | 4.49e-01 | 88.9% | 70.6% |
| 4iv6B01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.54 | 41.0 | 3.64e-01 | 81.5% | 84.5% |
| 6orcB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 38.0 | 3.32e-01 | 77.8% | 94.8% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4353 | 605.4.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › Rop | 0.81 | 48.0 | 5.61e-01 | 82.7% | 83.1% |
| 3697212 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.79 | 58.0 | 3.43e-01 | 76.5% | 16.1% |
| 3683268 | 109.4.1.1304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 | 0.78 | 55.0 | 3.46e-01 | 92.6% | 15.9% |
| 3606518 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 47.0 | 3.06e-01 | 87.7% | 15.9% |
| 4997717 | 304.48.1.3 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B | 0.74 | 60.0 | 3.90e-01 | 85.2% | 28.1% |
| 3657787 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 63.0 | 4.58e-01 | 92.6% | 35.8% |
| 3718104 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 58.0 | 3.45e-01 | 86.4% | 15.3% |
| 3386700 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.73 | 52.0 | 3.53e-01 | 75.3% | 86.1% |
| 3719927 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.73 | 58.0 | 3.20e-01 | 86.4% | 8.1% |
| 3477822 | 1147.1.1.1 ↗ | alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL | 0.72 | 52.0 | 4.48e-01 | 75.3% | 63.2% |
| 3785883 | 4177.1.1.97 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PF30147 | 0.70 | 55.0 | 4.09e-01 | 81.5% | 66.5% |
| 4018548 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.69 | 56.0 | 5.00e-01 | 86.4% | 66.4% |
| 3634960 | 603.1.1.5 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N | 0.68 | 55.0 | 5.00e-01 | 87.7% | 70.0% |
| 3367754 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.66 | 51.0 | 2.99e-01 | 81.5% | 11.6% |
| 4013299 | 109.4.1.1304 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_10, TPR_12 | 0.65 | 56.0 | 3.39e-01 | 91.4% | 15.6% |
| 3279314 | 633.6.1.1 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 | 0.65 | 52.0 | 4.29e-01 | 86.4% | 51.7% |
| 3929139 | 5001.1.1.83 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_7 | 0.65 | 54.0 | 3.56e-01 | 87.7% | 68.8% |
| 3229891 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.64 | 52.0 | 4.37e-01 | 86.4% | 77.8% |
| 3474664 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 46.0 | 3.57e-01 | 74.1% | 65.3% |
| 4017359 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.64 | 47.0 | 3.14e-01 | 77.8% | 80.8% |
| 3643764 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.63 | 51.0 | 3.89e-01 | 88.9% | 36.5% |
| 3939646 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.63 | 57.0 | 3.24e-01 | 100.0% | 25.6% |
| 4884253 | 1038.1.1.1 ↗ | alpha complex topology › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain › Pre-mRNA-splicing factor 8 N-terminal domain › PRO8NT,PROCN | 0.62 | 51.0 | 2.94e-01 | 97.5% | 9.1% |
| 3894879 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.62 | 50.0 | 4.62e-01 | 90.1% | 68.6% |
| 3520880 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 54.0 | 3.18e-01 | 100.0% | 32.9% |
| 4282118 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.62 | 54.0 | 3.26e-01 | 100.0% | 63.7% |
| 3790626 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 54.0 | 3.95e-01 | 100.0% | 77.7% |
| 3380611 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.60 | 50.0 | 3.20e-01 | 90.1% | 21.1% |
| 3230591 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 48.0 | 3.32e-01 | 100.0% | 26.0% |
| 5054703 | 7512.1.1.18 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn | 0.60 | 49.0 | 3.22e-01 | 86.4% | 38.1% |
| 3564106 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.60 | 47.0 | 4.41e-01 | 88.9% | 67.6% |
| 3616025 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 53.0 | 3.87e-01 | 100.0% | 72.6% |
| 3367159 | 109.4.1.1529 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135, TPR_12 | 0.59 | 53.0 | 3.15e-01 | 100.0% | 26.6% |
| 3936432 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 51.0 | 3.85e-01 | 100.0% | 82.4% |
| 3833688 | 109.4.1.1565 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135, TPR_10, TPR_12 | 0.58 | 51.0 | 3.01e-01 | 100.0% | 48.8% |
| 3677853 | 109.4.1.1529 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135, TPR_12 | 0.57 | 50.0 | 2.91e-01 | 100.0% | 44.3% |
| 3773859 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.57 | 45.0 | 4.19e-01 | 90.1% | 68.6% |
| 4142148 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 48.0 | 2.94e-01 | 100.0% | 56.6% |
| 3830525 | 109.4.1.1529 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3_p135, TPR_12 | 0.56 | 48.0 | 2.96e-01 | 100.0% | 47.9% |
| 4600741 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.56 | 45.0 | 2.76e-01 | 87.7% | 52.2% |
| 3368459 | 109.4.1.777 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.05e-01 | 96.3% | 21.3% |
| 4649132 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.56 | 48.0 | 2.79e-01 | 100.0% | 42.2% |
| 3929285 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.56 | 44.0 | 4.18e-01 | 90.1% | 72.0% |
| 3333592 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 50.0 | 3.68e-01 | 98.8% | 82.0% |
| 3866300 | 109.4.1.192 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 | 0.55 | 47.0 | 2.98e-01 | 98.8% | 25.1% |
| 2765423 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 47.0 | 3.77e-01 | 97.5% | 82.0% |
| 3726137 | 109.4.1.777 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 46.0 | 3.72e-01 | 97.5% | 68.0% |
| 4226243 | 109.4.1.1320 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_10, TPR_12 | 0.51 | 45.0 | 3.03e-01 | 96.3% | 27.0% |
D2
high
residues 90-138
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ql2C00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.80 | 65.0 | 6.14e-01 | 87.8% | 75.9% |
| 4n1aB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 56.0 | 3.44e-01 | 100.0% | 59.4% |
| 2bl0C01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 42.0 | 3.79e-01 | 73.5% | 97.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3391047 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 62.0 | 5.86e-01 | 95.9% | 70.0% |
| 4034107 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.73 | 61.0 | 4.59e-01 | 100.0% | 98.5% |
| 5006115 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.72 | 65.0 | 3.90e-01 | 100.0% | 93.2% |
| 3990385 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.58 | 42.0 | 3.68e-01 | 81.6% | 50.7% |