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MT028491.1__QIG65812.1__phiOC_p147__00146

Bact-Vir

MT028491.1__QIG65812.1__phiOC_p147__00146

Identity

Accession:
MT028491 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ochrobactrum_phage_vB_OspM_OC

TaxID: 2712956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 239-304
PDB
Domain cluster: rep: MW388005.1__QQO39020.1__X__00046__D8-66
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01471.24 best PG_binding_1 44.9 1.50e-11 86.4% 89.5%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c2dA02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.91 85.0 7.71e-01 100.0% 77.6%
3bkhA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.89 82.0 7.47e-01 100.0% 76.7%
4g54A02 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.86 79.0 7.67e-01 100.0% 91.7%
1lbuA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.85 79.0 7.19e-01 100.0% 82.1%
1ck7A01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.80 62.0 4.15e-01 84.8% 23.0%
1eakA01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.80 62.0 6.34e-01 86.4% 87.3%
7aj9A01 1.10.101.10 Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD 0.79 64.0 6.37e-01 87.9% 89.6%
1jr8A00 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.58 40.0 3.43e-01 71.2% 81.0%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 40.0 3.77e-01 74.2% 88.0%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 38.0 4.07e-01 72.7% 98.2%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 38.0 3.64e-01 72.7% 94.9%
2jo7A00 1.10.4170.10 Mainly Alpha › Orthogonal Bundle › Glycosylphosphatidylinositol-anchored merozoite surface protein › Glycosylphosphatidylinositol-anchored merozoite surface protein 0.54 39.0 2.70e-01 75.8% 32.1%
7vepA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 40.0 2.73e-01 80.3% 35.5%
3lopA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 43.0 3.03e-01 89.4% 34.3%
3ha4B00 1.20.58.690 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 37.0 3.10e-01 74.2% 66.7%
1t98A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.47e-01 77.3% 62.1%
3ikhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 40.0 2.62e-01 83.3% 55.2%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.52 36.0 3.18e-01 72.7% 50.0%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.50 38.0 3.12e-01 84.8% 43.3%
2q0tB01 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.50 39.0 2.62e-01 83.3% 29.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1934000 144.1.1.2 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1,PG_binding_5 0.94 87.0 6.33e-01 100.0% 41.1%
1498420 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.92 85.0 8.07e-01 100.0% 85.5%
5019285 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.92 86.0 7.46e-01 100.0% 71.6%
1165079 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.91 85.0 7.33e-01 100.0% 68.8%
4218606 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.91 85.0 7.75e-01 100.0% 80.7%
4032027 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.90 84.0 7.64e-01 100.0% 77.6%
4055540 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.89 75.0 7.42e-01 89.4% 85.5%
3275963 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.89 82.0 7.32e-01 100.0% 76.7%
3291401 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.89 82.0 7.48e-01 100.0% 82.4%
3263339 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.88 82.0 7.80e-01 100.0% 94.7%
3955223 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.88 83.0 7.67e-01 100.0% 93.8%
2859574 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.88 77.0 7.58e-01 100.0% 88.7%
3959835 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.88 81.0 7.99e-01 100.0% 98.6%
4173379 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.87 81.0 7.54e-01 100.0% 85.0%
4312892 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.87 70.0 7.32e-01 87.9% 93.3%
1877329 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 75.0 7.15e-01 100.0% 81.6%
4038380 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 75.0 7.15e-01 93.9% 88.0%
224034 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 79.0 7.32e-01 100.0% 81.5%
3302194 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 79.0 6.90e-01 100.0% 76.8%
4117418 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.86 68.0 7.16e-01 84.8% 93.3%
3299934 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.85 78.0 6.59e-01 100.0% 66.7%
3395 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.85 79.0 7.22e-01 100.0% 83.1%
3319740 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.84 76.0 6.99e-01 100.0% 81.2%
3060287 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.84 74.0 7.07e-01 100.0% 84.0%
3332533 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.83 76.0 6.52e-01 100.0% 84.0%
3631772 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.82 74.0 5.28e-01 98.5% 61.7%
1904136 144.1.1.0 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like 0.80 70.0 6.69e-01 95.5% 85.3%
4010440 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.80 72.0 6.93e-01 100.0% 88.0%
2819638 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.79 70.0 5.83e-01 100.0% 59.5%
3930763 144.1.1.1 ↗ alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 0.77 70.0 6.69e-01 98.5% 86.7%
3548455 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 65.0 5.23e-01 98.5% 62.5%
4992012 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 40.0 4.21e-01 74.2% 75.0%
5025838 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.56 46.0 3.54e-01 93.9% 69.1%
3204361 316.1.1.63 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF7582 0.56 40.0 2.78e-01 74.2% 52.3%
3946046 101.1.2.52 ↗ alpha arrays › HTH › HTH › winged helix domain › KicB 0.55 38.0 3.67e-01 72.7% 72.0%
3600922 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 36.0 3.78e-01 72.7% 76.7%
3341306 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.52 38.0 3.16e-01 80.3% 83.2%
D2 high residues 320-421
PDB
D3 medium residues 1-62_156-228
PDB
Domain cluster: rep: BML_08182015_6_5m_scaffold_7_prodigal-single.1__X__X__00070__D4-57_130-172
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ltmA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.69 51.0 4.71e-01 77.0% 92.5%
3ct5A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.64 52.0 4.90e-01 85.9% 100.0%
2k3nA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 39.0 3.73e-01 87.4% 55.6%
1gep001 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.58 40.0 3.73e-01 71.9% 86.2%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.58 31.0 3.52e-01 88.1% 67.6%
5hfiA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 44.0 3.91e-01 84.4% 96.0%
3lphC00 6.10.140.630 Special › Helix non-globular › Helix Hairpins › 0.53 21.0 3.13e-01 88.1% 84.5%
2vixA02 1.10.150.630 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.53 31.0 3.65e-01 89.6% 86.5%
1at3A00 3.20.16.10 Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain 0.52 43.0 3.69e-01 88.9% 75.1%
4jrrB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 44.0 4.03e-01 96.3% 88.0%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3610347 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.58 34.0 4.03e-01 81.5% 88.2%
3743444 524.1.1.1 ↗ alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.55 45.0 4.47e-01 87.4% 91.4%
3249600 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 42.0 3.97e-01 83.7% 87.9%
3376953 5073.1.1.7 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › PhoLip_ATPase_C 0.53 39.0 2.97e-01 77.8% 89.9%
D4 medium residues 63-155
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_75050_prodigal-single.1__X__X__00070__D62-128