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MT028491.1__QIG66014.1__phiOC_p372__00348

Bact-Vir

MT028491.1__QIG66014.1__phiOC_p372__00348

Identity

Accession:
MT028491 ↗
Kingdom:
phage

Quality

79.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ochrobactrum_phage_vB_OspM_OC

TaxID: 2712956

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ssoA01 3.30.1050.30 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › 0.66 41.0 3.19e-01 100.0% 28.6%
1k28D04 3.30.1920.40 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › 0.64 31.0 3.29e-01 100.0% 48.4%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.20e-01 100.0% 74.0%
2fe3A02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.53 34.0 3.68e-01 98.6% 80.7%
4lmyA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.53 34.0 3.79e-01 100.0% 87.0%
2kmcA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 47.0 4.16e-01 100.0% 79.4%
1atrA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 43.0 3.94e-01 100.0% 70.8%
6w9rB01 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.52 35.0 2.79e-01 100.0% 31.4%
1zxhA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 38.0 4.17e-01 100.0% 100.0%
1oeyL00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 45.0 4.08e-01 100.0% 87.8%
1t0yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 46.0 4.22e-01 100.0% 87.8%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 37.0 3.89e-01 100.0% 86.2%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 45.0 3.08e-01 100.0% 49.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.50 29.0 2.72e-01 100.0% 41.8%
1yn3A00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.50 45.0 4.02e-01 100.0% 98.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4605820 268.1.1.5 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N 0.63 39.0 3.09e-01 100.0% 29.3%
3166586 3470.1.1.43 ↗ extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › PF29527 0.61 37.0 4.31e-01 100.0% 86.0%
4946739 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.61 44.0 4.60e-01 100.0% 84.6%
4669955 239.1.1.0 ↗ beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.59 51.0 4.29e-01 100.0% 97.6%
5037895 268.1.1.0 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.56 36.0 3.00e-01 100.0% 36.0%
3620338 11.1.5.84 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ERMP1_C 0.56 49.0 3.46e-01 100.0% 97.8%
3579990 5.1.3.220 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_ELP1_2nd 0.56 38.0 2.45e-01 71.4% 23.6%
427824 268.1.1.5 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N 0.56 37.0 2.90e-01 100.0% 30.0%
4492970 230.6.1.2 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › FliL 0.54 39.0 3.54e-01 78.6% 96.0%
3995034 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 48.0 4.60e-01 100.0% 95.0%
4220379 268.1.1.5 ↗ a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › MycE_N 0.53 36.0 2.91e-01 100.0% 33.8%
3786125 221.1.1.179 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ams2-SPT21_N 0.53 46.0 3.76e-01 100.0% 95.7%
3701346 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.52 46.0 4.38e-01 100.0% 89.4%
3921571 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.52 46.0 4.35e-01 100.0% 90.6%
3348567 221.1.1.51 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_C2 0.51 47.0 4.39e-01 100.0% 96.5%
3406780 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 46.0 4.23e-01 100.0% 86.7%
3740157 221.1.1.68 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ATG5_UblA 0.51 46.0 4.02e-01 100.0% 81.9%
3235388 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 46.0 4.21e-01 100.0% 91.1%
3267404 221.1.1.2 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin 0.51 46.0 4.31e-01 100.0% 92.9%
3704397 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 45.0 4.21e-01 100.0% 94.1%
3488420 221.1.1.52 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Ubiquitin_2 0.50 45.0 4.08e-01 100.0% 83.2%
3517955 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.50 36.0 2.94e-01 78.6% 95.3%