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MT028491.1__QIG66056.1__phiOC_p414__00390

Bact-Vir

MT028491.1__QIG66056.1__phiOC_p414__00390

Identity

Accession:
MT028491 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Ochrobactrum_phage_vB_OspM_OC

TaxID: 2712956

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.80 64.0 6.16e-01 86.3% 78.9%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.76 61.0 5.50e-01 90.2% 78.9%
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.72 55.0 4.24e-01 86.3% 92.6%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 48.0 2.91e-01 72.5% 20.2%
1jmxB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.70 48.0 2.89e-01 72.5% 14.7%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.69 52.0 3.19e-01 82.4% 99.3%
2dlxA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.69 51.0 4.09e-01 84.3% 85.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 50.0 3.71e-01 76.5% 45.9%
1mgpA02 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.69 52.0 4.06e-01 86.3% 45.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 49.0 3.91e-01 80.4% 37.0%
3ow8C00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 46.0 2.87e-01 72.5% 20.0%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.67 48.0 4.67e-01 78.4% 77.6%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.66 47.0 3.84e-01 76.5% 44.9%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 48.0 3.63e-01 80.4% 31.7%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 44.0 2.65e-01 70.6% 17.3%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 54.0 3.96e-01 94.1% 70.5%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.63 44.0 3.56e-01 72.5% 40.0%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 49.0 3.60e-01 94.1% 72.6%
5ov3B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 48.0 2.92e-01 82.4% 19.5%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.62 42.0 3.90e-01 80.4% 56.2%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 47.0 2.86e-01 82.4% 21.6%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 47.0 4.02e-01 88.2% 82.2%
3ijcA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 53.0 3.21e-01 100.0% 24.4%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.18e-01 80.4% 27.1%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 47.0 3.54e-01 92.2% 73.3%
1e2tA02 3.30.1120.150 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 39.0 3.43e-01 76.5% 43.0%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 49.0 3.00e-01 100.0% 18.4%
3sm3A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 40.0 2.63e-01 74.5% 27.4%
2ctdA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.56 42.0 3.50e-01 84.3% 55.2%
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 3.71e-01 88.2% 63.9%
2ky6A00 2.40.290.30 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain 0.56 41.0 2.89e-01 80.4% 72.9%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 40.0 3.90e-01 84.3% 67.7%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.55 44.0 2.76e-01 100.0% 19.8%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 48.0 2.84e-01 100.0% 66.3%
3kbgA02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.54 39.0 3.93e-01 100.0% 81.1%
3odtA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 2.91e-01 100.0% 19.6%
2i99A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.53 42.0 3.01e-01 86.3% 96.0%
4lg8A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.77e-01 100.0% 19.0%
3dcdA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 43.0 2.71e-01 98.0% 45.5%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 3.06e-01 78.4% 46.0%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.74e-01 100.0% 18.6%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 45.0 3.40e-01 100.0% 53.2%
5nfiB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.10e-01 94.1% 78.9%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 40.0 2.42e-01 100.0% 18.0%
2vt1B00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.50 37.0 3.27e-01 82.4% 74.1%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3992505 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.85 77.0 4.78e-01 100.0% 24.3%
3933713 109.3.1.96 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.83 77.0 4.75e-01 100.0% 23.5%
4995200 3407.1.1.2 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.81 57.0 4.34e-01 74.5% 52.2%
119245 252.3.1.1 ↗ a+b two layers › DNA-binding domain › Uncharacterized protein yaiA › Uncharacterized protein yaiA › YaiA 0.76 61.0 5.50e-01 90.2% 78.9%
4947834 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.75 59.0 4.56e-01 86.3% 41.0%
3898218 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.75 55.0 3.78e-01 80.4% 29.7%
3576129 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.73 49.0 3.08e-01 70.6% 37.5%
3567160 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.72 50.0 2.84e-01 72.5% 12.4%
3501222 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.72 50.0 3.12e-01 72.5% 26.4%
4119222 375.1.1.135 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev 0.71 46.0 4.68e-01 72.5% 68.0%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.70 55.0 5.13e-01 86.3% 71.9%
3399971 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 48.0 2.84e-01 72.5% 15.3%
3870514 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.70 51.0 3.91e-01 80.4% 34.8%
5077760 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 48.0 2.77e-01 72.5% 12.5%
3600994 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.69 53.0 3.03e-01 82.4% 21.0%
4961528 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 48.0 3.78e-01 74.5% 62.9%
4028913 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 52.0 3.06e-01 82.4% 19.8%
3656729 5.1.2.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.67 46.0 3.38e-01 70.6% 42.1%
5000262 5.1.11.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_CGLA 0.67 49.0 2.90e-01 80.4% 15.7%
4385221 3943.1.1.0 ↗ beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains 0.66 48.0 3.69e-01 78.4% 51.3%
3311122 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.65 45.0 2.96e-01 72.5% 28.6%
3657897 5.1.10.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.65 44.0 4.23e-01 72.5% 73.3%
5047317 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.64 55.0 4.72e-01 100.0% 62.4%
5081423 378.1.1.3 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 0.64 47.0 4.15e-01 78.4% 75.7%
None — 0.64 45.0 2.94e-01 74.5% 17.8%
3781230 1013.1.1.1 ↗ beta duplicates or obligate multimers › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › WD repeat-containing protein 48 ancillary domain › DUF3337 0.64 54.0 3.58e-01 96.1% 67.1%
3347231 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 47.0 3.48e-01 80.4% 43.8%
3241191 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 48.0 3.72e-01 86.3% 37.4%
3931499 5.1.4.441 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin-link 0.63 50.0 3.05e-01 90.2% 22.5%
4195544 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.62 47.0 2.72e-01 82.4% 31.2%
3935471 4292.1.1.0 ↗ a+b two layers › FlaG-like › FlaG-related › FlaG-related 0.62 43.0 3.75e-01 76.5% 63.5%
4949985 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 45.0 3.98e-01 86.3% 52.5%
3993139 5.1.3.113 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BCAS3_WD40 0.61 45.0 3.04e-01 80.4% 48.3%
3718455 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.61 50.0 4.03e-01 100.0% 89.5%
3992587 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 53.0 3.00e-01 100.0% 11.4%
3499324 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.59 52.0 2.78e-01 100.0% 6.9%
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.20e-01 100.0% 78.0%
3849084 5.1.11.11 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › WD40 0.58 49.0 2.92e-01 100.0% 14.5%
3755410 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 50.0 2.94e-01 100.0% 14.4%
4929701 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.58 43.0 4.16e-01 88.2% 83.3%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 2.81e-01 100.0% 14.9%
3691522 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 51.0 3.10e-01 100.0% 18.6%
3649435 2.1.1.9 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S4e 0.55 41.0 3.18e-01 86.3% 61.5%
3548894 5.1.4.320 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_LRRK2 0.55 44.0 2.68e-01 94.1% 17.6%
5014250 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.71e-01 88.2% 88.7%
3998928 5.1.5.236 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.54 45.0 3.12e-01 100.0% 31.8%
3448058 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 43.0 2.67e-01 100.0% 18.6%
3716396 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 37.0 2.57e-01 76.5% 20.5%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.76e-01 100.0% 80.0%
3399512 5.1.4.343 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, WD40_WDHD1_1st 0.52 43.0 2.74e-01 100.0% 22.3%
5028332 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.52 36.0 2.77e-01 74.5% 93.6%
4459482 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.51 38.0 2.49e-01 100.0% 19.1%
4145207 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 34.0 2.50e-01 70.6% 33.8%
3718492 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 41.0 2.76e-01 100.0% 24.8%