←Back to structures
MT074142.1__QIG64317.1__DAC23_39__00039
Bact-VirMT074142.1__QIG64317.1__DAC23_39__00039
Identity
- Accession:
- MT074142 ↗
- Kingdom:
- phage
Quality
76.1
mean pLDDT
Cluster
View cluster (7 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-66
D2
medium
residues 67-155
Domain cluster:
rep: Mad1_20_16_scaffold_0_curated_closed_complete_start-adj_prodigal-single.1__X__X__00030__D2-12_75-145
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qkbA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.69 | 51.0 | 4.23e-01 | 92.1% | 44.7% |
| 3htxA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 49.0 | 5.25e-01 | 91.0% | 92.1% |
| 2nugB02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 47.0 | 5.12e-01 | 97.8% | 95.8% |
| 2l6mA00 | 3.30.160.400 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.64 | 55.0 | 5.30e-01 | 97.8% | 83.2% |
| 2c5wB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.57 | 50.0 | 3.29e-01 | 100.0% | 22.3% |
| 3iayA03 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.57 | 40.0 | 3.10e-01 | 74.2% | 38.0% |
| 2oz8A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 43.0 | 3.81e-01 | 88.8% | 55.8% |
| 2gdqA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 40.0 | 3.86e-01 | 86.5% | 64.5% |
| 4g1gA02 | 2.70.20.60 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain | 0.55 | 40.0 | 3.29e-01 | 77.5% | 97.6% |
| 5jeaD00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.55 | 39.0 | 2.92e-01 | 75.3% | 71.0% |
| 3ly7A01 | 3.40.50.11830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 47.0 | 3.91e-01 | 97.8% | 59.0% |
| 3ejvA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 37.0 | 3.15e-01 | 71.9% | 45.3% |
| 5jeaC00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.54 | 38.0 | 2.65e-01 | 75.3% | 66.6% |
| 2nn6F00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.53 | 37.0 | 2.79e-01 | 74.2% | 67.3% |
| 5du9B02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.52 | 40.0 | 3.11e-01 | 85.4% | 59.9% |
| 1qlwA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 46.0 | 3.15e-01 | 100.0% | 76.4% |
| 2wp8A00 | 3.30.230.70 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain | 0.51 | 39.0 | 2.90e-01 | 83.1% | 79.2% |
| 2oztA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.50 | 39.0 | 3.62e-01 | 88.8% | 64.4% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3663237 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 50.0 | 5.20e-01 | 95.5% | 95.0% |
| 3456246 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.62 | 51.0 | 5.11e-01 | 96.6% | 87.8% |
| 4463772 | 2484.1.1.36 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_2 | 0.62 | 47.0 | 3.36e-01 | 86.5% | 27.2% |
| 3596522 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 54.0 | 5.05e-01 | 100.0% | 77.3% |
| 3599949 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.61 | 45.0 | 4.45e-01 | 96.6% | 73.7% |
| 4968312 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.59 | 49.0 | 3.72e-01 | 91.0% | 61.7% |
| 3466381 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 53.0 | 4.98e-01 | 100.0% | 80.9% |
| 3371527 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 52.0 | 4.62e-01 | 95.5% | 71.8% |
| 3575427 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 51.0 | 4.48e-01 | 100.0% | 63.7% |
| 3875620 | 883.1.1.1 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP | 0.58 | 42.0 | 3.39e-01 | 78.7% | 60.5% |
| 4442643 | 330.1.1.25 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980 | 0.58 | 51.0 | 5.08e-01 | 98.9% | 95.6% |
| 3226258 | 3180.1.1.2 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › F-box | 0.57 | 42.0 | 3.96e-01 | 76.4% | 79.0% |
| 3576653 | 330.1.1.3 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer | 0.57 | 48.0 | 4.36e-01 | 89.9% | 74.8% |
| 3715587 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.56 | 44.0 | 4.04e-01 | 95.5% | 64.2% |
| 3639482 | 220.1.1.211 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7612 | 0.56 | 47.0 | 4.03e-01 | 91.0% | 77.9% |
| 3943316 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.56 | 43.0 | 3.60e-01 | 84.3% | 95.0% |
| 3270453 | 2484.1.1.120 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_4 | 0.56 | 44.0 | 3.79e-01 | 87.6% | 54.3% |
| 3603587 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.54 | 42.0 | 4.31e-01 | 97.8% | 88.2% |
| 4992937 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.54 | 47.0 | 3.22e-01 | 100.0% | 75.1% |
| 3702318 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.54 | 46.0 | 3.46e-01 | 96.6% | 95.2% |
| 165087 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.54 | 43.0 | 3.65e-01 | 88.8% | 53.2% |
| 5010248 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.53 | 41.0 | 4.29e-01 | 97.8% | 95.0% |
| 3469386 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.52 | 36.0 | 2.85e-01 | 75.3% | 67.9% |
| 4996592 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.51 | 44.0 | 3.06e-01 | 100.0% | 30.4% |
| 5008722 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 38.0 | 2.66e-01 | 80.9% | 23.3% |
| 3828275 | 219.1.1.71 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PDDEXK_6 | 0.51 | 41.0 | 3.32e-01 | 89.9% | 52.8% |
| 3220519 | 213.1.1.22 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Hat1_N | 0.51 | 42.0 | 3.43e-01 | 88.8% | 67.5% |
| 5082381 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.51 | 37.0 | 2.47e-01 | 80.9% | 65.9% |
| 3627091 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 41.0 | 2.99e-01 | 86.5% | 90.0% |
| 3784224 | 220.1.1.70 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 | 0.51 | 36.0 | 3.16e-01 | 84.3% | 50.8% |
| 3276957 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.51 | 42.0 | 3.55e-01 | 91.0% | 70.7% |
| 3262972 | 158.1.1.0 ↗ | alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase | 0.50 | 43.0 | 2.82e-01 | 100.0% | 67.0% |