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MT074142.1__QIG64405.1__DAC23_127__00127

Bact-Vir

MT074142.1__QIG64405.1__DAC23_127__00127

Identity

Accession:
MT074142 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacteroides_phage_DAC23

TaxID: 2710501

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-88
PDB
Domain cluster: rep: IMGVR_UViG_3300028627_000020-3300028627-Ga0302243_100046048__D171-228
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 55.0 5.68e-01 80.8% 82.4%
1aolA00 3.90.310.10 Alpha Beta › Alpha-Beta Complex › Viral Glycoprotein Gp70 › ENV polyprotein, receptor-binding domain 0.59 44.0 3.18e-01 80.8% 96.9%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 41.0 3.18e-01 78.1% 58.1%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.54 41.0 4.00e-01 100.0% 74.7%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 36.0 3.37e-01 84.9% 54.8%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 40.0 2.83e-01 84.9% 85.8%
2jtcA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.53 42.0 3.07e-01 94.5% 34.0%
2dhoA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 38.0 2.84e-01 80.8% 78.1%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.49e-01 94.5% 73.0%
3hfnA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 4.06e-01 95.9% 100.0%
3cf6E02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 39.0 3.38e-01 83.6% 57.8%
2qlcA00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 38.0 3.19e-01 80.8% 75.4%
2byvE03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 39.0 2.92e-01 83.6% 36.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.87 66.0 6.80e-01 82.2% 84.1%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.79 56.0 5.30e-01 74.0% 64.7%
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.75 55.0 5.64e-01 80.8% 81.2%
4947142 4160.1.1.3 ↗ beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › PF26233 0.58 48.0 3.61e-01 97.3% 97.5%
3950412 11.1.4.130 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 0.54 38.0 3.82e-01 89.0% 72.0%
4347828 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 37.0 3.80e-01 74.0% 75.7%
3248340 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.52 40.0 2.93e-01 86.3% 86.7%
3972503 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.52 40.0 3.28e-01 83.6% 48.1%
4052065 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 40.0 3.23e-01 83.6% 47.1%
4274058 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.51 37.0 3.41e-01 75.3% 80.0%
3249088 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.51 40.0 2.88e-01 86.3% 80.5%
3472207 10.12.1.1 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.51 44.0 3.06e-01 94.5% 58.3%
D2 medium residues 102-241
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xfaA04 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.70 32.0 4.11e-01 75.0% 71.8%
3l9fA02 6.10.140.1570 Special › Helix non-globular › Helix Hairpins › 0.69 30.0 3.93e-01 71.4% 70.4%
6q9jB02 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.67 33.0 4.06e-01 75.7% 73.9%
4ofzA01 1.20.58.1800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 34.0 3.82e-01 80.7% 64.6%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.63 27.0 3.55e-01 77.1% 70.5%
4abxA02 6.10.140.1090 Special › Helix non-globular › Helix Hairpins › 0.59 27.0 3.31e-01 70.0% 65.5%
2gtvX00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.59 28.0 3.24e-01 80.7% 59.6%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.58 25.0 3.19e-01 70.7% 69.0%
3dcfA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 32.0 3.25e-01 83.6% 54.9%
5jrcA00 1.20.58.2140 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 44.0 4.07e-01 90.7% 86.6%
3t9oB00 1.20.120.30 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartate receptor, ligand-binding domain 0.52 30.0 3.29e-01 89.3% 65.8%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.50 25.0 2.88e-01 72.9% 62.8%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3530272 632.22.1.175 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF4527 0.76 31.0 4.53e-01 71.4% 80.0%
3501709 605.1.1.1 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 32.0 4.26e-01 72.9% 80.0%
4213502 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.65 32.0 3.59e-01 80.0% 59.1%
4057021 605.4.1.20 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › DUF6092 0.63 29.0 3.53e-01 87.9% 65.6%
5007086 4336.1.1.1 ↗ alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.62 29.0 3.27e-01 74.3% 55.5%
2474881 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.60 23.0 3.71e-01 91.4% 100.0%
3792952 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.57 27.0 3.53e-01 72.9% 81.3%
5061319 632.11.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 31.0 3.43e-01 85.0% 66.1%
4331806 109.4.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.54 37.0 3.72e-01 100.0% 68.6%
4344857 650.1.1.2 ↗ alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Pam16 0.52 30.0 3.73e-01 75.7% 92.9%
4491518 7516.1.1.153 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, Glyco_transf_8 0.51 39.0 2.65e-01 82.1% 37.5%