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MT074142.1__QIG64524.1__DAC23_250__00246
Bact-VirMT074142.1__QIG64524.1__DAC23_250__00246
Identity
- Accession:
- MT074142 ↗
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-48_131-229
Domain cluster:
rep: AB366653.2__BAG41672.1__X__00222__D20-44_116-236
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1gpcA00 | 3.90.198.10 | Alpha Beta › Alpha-Beta Complex › Replication Fork Single-Stranded DNA Binding Protein › Replication Fork Single-Stranded Dna Binding Protein | 0.79 | 72.0 | 6.00e-01 | 97.0% | 87.2% |
| 1ib8A02 | 2.30.30.180 | Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain | 0.72 | 28.0 | 3.80e-01 | 80.6% | 68.7% |
| 4jbjA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 43.0 | 4.72e-01 | 91.0% | 90.9% |
| 5l37C00 | 2.40.50.220 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml | 0.56 | 34.0 | 4.11e-01 | 76.1% | 93.0% |
| 2k5wA00 | 2.40.50.480 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 | 0.54 | 39.0 | 4.17e-01 | 82.8% | 90.1% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4950085 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.60 | 41.0 | 3.27e-01 | 91.0% | 35.8% |
| 3100772 | 2.1.1.2 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 | 0.58 | 31.0 | 3.75e-01 | 82.1% | 80.2% |
| 3248470 | 3468.1.1.0 ↗ | a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain | 0.56 | 39.0 | 4.11e-01 | 84.3% | 79.2% |
| 5000515 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 32.0 | 3.67e-01 | 80.6% | 76.8% |
| 3281968 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 35.0 | 4.06e-01 | 77.6% | 93.7% |
| 3906455 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 25.0 | 3.41e-01 | 85.8% | 95.0% |
| 3666058 | 2.1.1.44 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 | 0.52 | 34.0 | 3.84e-01 | 77.6% | 91.6% |
| 3539840 | 2.1.1.188 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSDE1 | 0.52 | 32.0 | 3.88e-01 | 76.1% | 98.8% |
| 3739616 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.52 | 39.0 | 3.03e-01 | 77.6% | 52.9% |
| 3865654 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.50 | 31.0 | 3.31e-01 | 73.9% | 67.5% |
D2
high
residues 322-378
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l0iA01 | 1.20.120.1520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.71 | 52.0 | 3.66e-01 | 77.2% | 35.2% |
| 2ld7A00 | 6.10.160.20 | Special › Helix non-globular › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › | 0.68 | 44.0 | 3.80e-01 | 70.2% | 40.4% |
| 1ztdA00 | 1.10.1520.20 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III | 0.66 | 44.0 | 3.46e-01 | 70.2% | 91.2% |
| 6fhpD00 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.64 | 46.0 | 4.57e-01 | 77.2% | 74.2% |
| 2uvgA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 46.0 | 3.07e-01 | 77.2% | 27.7% |
| 2vlaA01 | 1.10.10.2080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 46.0 | 4.18e-01 | 82.5% | 60.3% |
| 2m0aA01 | 3.10.20.350 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.61 | 47.0 | 4.04e-01 | 84.2% | 68.8% |
| 5b7sB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 49.0 | 3.81e-01 | 100.0% | 69.6% |
| 2g7hA01 | 3.30.160.460 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 3.63e-01 | 71.9% | 81.6% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.57 | 45.0 | 4.02e-01 | 86.0% | 71.6% |
| 2m4eA00 | 1.20.120.1930 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family | 0.57 | 48.0 | 4.31e-01 | 100.0% | 75.6% |
| 7qocA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 48.0 | 3.37e-01 | 100.0% | 37.4% |
| 1vw4801 | 1.10.1200.10 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like | 0.54 | 41.0 | 3.83e-01 | 82.5% | 76.7% |
| 2ee7A01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.52 | 41.0 | 3.53e-01 | 100.0% | 90.4% |
| 1f6yA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.52 | 38.0 | 2.59e-01 | 84.2% | 50.4% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.51 | 43.0 | 3.81e-01 | 94.7% | 81.4% |
| 6bz0D01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 41.0 | 2.76e-01 | 89.5% | 94.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5012292 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.68 | 47.0 | 3.34e-01 | 100.0% | 24.0% |
| 2858908 | 170.1.1.4 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Arc_C | 0.66 | 47.0 | 4.90e-01 | 78.9% | 81.1% |
| 3651198 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 43.0 | 4.41e-01 | 87.7% | 81.8% |
| 3679962 | 101.28.1.0 ↗ | alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins | 0.56 | 42.0 | 4.31e-01 | 87.7% | 85.5% |
| 3645744 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.55 | 42.0 | 3.68e-01 | 87.7% | 53.3% |
| 3702921 | 148.1.3.10 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 | 0.55 | 35.0 | 3.21e-01 | 98.2% | 48.0% |
| 4984965 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.54 | 42.0 | 3.86e-01 | 86.0% | 96.0% |
| 3519543 | 132.1.1.2 ↗ | alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › Ribosomal_L50 | 0.53 | 41.0 | 3.76e-01 | 80.7% | 82.7% |
| 3369798 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.51 | 41.0 | 3.61e-01 | 87.7% | 62.4% |
D3
medium
residues 85-130_230-281
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.69 | 40.0 | 4.71e-01 | 72.4% | 83.6% |
| 1td6A03 | 1.10.472.40 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Hypothetical protein mg237 homolog; domain 3 | 0.66 | 37.0 | 3.86e-01 | 74.5% | 58.7% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 29.0 | 3.02e-01 | 100.0% | 50.0% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 39.0 | 4.33e-01 | 88.8% | 100.0% |
| 1k87A02 | 1.10.2060.10 | Mainly Alpha › Orthogonal Bundle › PutA proline dehydrogenase (PRODH), domain 2 › PutA proline dehydrogenase (PRODH), domain 2 | 0.55 | 36.0 | 3.49e-01 | 91.8% | 58.7% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.54 | 48.0 | 3.74e-01 | 100.0% | 87.2% |
| 2gslF00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.53 | 38.0 | 3.55e-01 | 75.5% | 89.8% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.53 | 38.0 | 4.00e-01 | 98.0% | 83.3% |
| 1bxiA00 | 1.10.1200.20 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Colicin E immunity protein | 0.52 | 32.0 | 3.47e-01 | 81.6% | 73.5% |
| 1oaoC01 | 1.10.8.190 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Carbon monoxide dehydrogenase alpha subunit. Chain M, domain 1 | 0.51 | 32.0 | 3.09e-01 | 100.0% | 52.5% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 38.0 | 3.76e-01 | 92.9% | 76.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.50 | 38.0 | 3.63e-01 | 81.6% | 76.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3515221 | 3324.1.1.2 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.58 | 37.0 | 3.36e-01 | 100.0% | 47.7% |
| 4391867 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.56 | 47.0 | 3.13e-01 | 94.9% | 39.1% |
| 3180887 | 174.1.1.9 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF1746 | 0.55 | 48.0 | 4.44e-01 | 99.0% | 76.9% |
| 3174642 | 109.4.1.3141 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29002 | 0.54 | 35.0 | 2.84e-01 | 90.8% | 33.0% |
| 3967936 | 142.1.1.3 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2 | 0.53 | 31.0 | 3.44e-01 | 71.4% | 73.3% |
| 4003837 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 32.0 | 3.25e-01 | 100.0% | 60.0% |
| 4253382 | 150.3.1.4 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IFN-gamma | 0.52 | 40.0 | 3.82e-01 | 98.0% | 69.2% |
| 3386958 | 601.13.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › Flagellar export chaperone FliS › Flagellar export chaperone FliS › FliS | 0.52 | 38.0 | 3.59e-01 | 79.6% | 76.8% |
| 3676299 | 605.6.1.9 ↗ | alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like › Cellulose_synt | 0.51 | 39.0 | 3.75e-01 | 82.7% | 89.6% |
| 3277855 | 3562.1.1.3 ↗ | alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › DUF6328 | 0.50 | 37.0 | 3.34e-01 | 80.6% | 91.0% |