Back to structures

MT074146.1__QIG64722.1__SJC03_44__00044

Bact-Vir

MT074146.1__QIG64722.1__SJC03_44__00044

Identity

Accession:
MT074146 ↗
Kingdom:
phage

Quality

95.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-102
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24644.2 best DUF7638 65.6 5.00e-18 98.9% 72.6%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 36.0 4.08e-01 87.5% 85.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 50.0 4.49e-01 98.9% 97.5%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 50.0 4.69e-01 100.0% 98.1%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 48.0 4.12e-01 100.0% 65.7%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 4.19e-01 100.0% 97.2%
1ogyA01 3.30.200.210 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.50 42.0 3.76e-01 96.6% 64.5%
3mpxA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 44.0 4.33e-01 100.0% 89.7%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 34.0 3.32e-01 81.8% 62.0%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281475 284.1.3.5 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF7638 0.94 88.0 8.14e-01 100.0% 81.9%
4189267 3604.1.1.0 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain 0.69 32.0 3.87e-01 71.6% 65.0%
5008350 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 36.0 3.75e-01 93.2% 68.8%
3259130 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 48.0 4.59e-01 100.0% 96.0%
3717655 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.52 46.0 4.41e-01 98.9% 96.0%
3916003 220.1.1.61 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 0.51 45.0 4.17e-01 100.0% 81.7%
4951126 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.51 41.0 3.32e-01 90.9% 62.8%
D2 high residues 108-163
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24645.2 best DUF7639 52.1 7.30e-14 98.2% 57.6%
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cj0A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.78 62.0 3.60e-01 85.7% 30.3%
2gomA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.76 67.0 6.52e-01 100.0% 88.5%
1w53A00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.74 60.0 5.23e-01 89.3% 84.5%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.73 65.0 4.62e-01 100.0% 64.6%
2wj9B00 3.30.70.3580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein 0.72 56.0 4.15e-01 85.7% 49.0%
5zigA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.71 63.0 3.75e-01 100.0% 25.5%
4k0dA00 1.20.120.1730 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 65.0 4.72e-01 100.0% 51.7%
2xqyA01 3.30.500.50 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.71 63.0 4.40e-01 100.0% 40.4%
3k7xA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.71 62.0 3.79e-01 100.0% 23.6%
8d0vA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.70 62.0 3.72e-01 100.0% 18.2%
2y1vA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 62.0 4.28e-01 100.0% 41.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.69 61.0 4.81e-01 100.0% 62.1%
2nr4A02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.68 59.0 5.83e-01 98.2% 93.1%
3gt5A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 61.0 3.65e-01 100.0% 24.8%
1ed1A00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.68 56.0 4.42e-01 91.1% 58.8%
4agsB04 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 60.0 4.58e-01 100.0% 61.7%
3wiwA00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.68 60.0 3.61e-01 100.0% 21.3%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 60.0 5.81e-01 100.0% 88.9%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.65 56.0 5.16e-01 98.2% 82.4%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.64 46.0 3.84e-01 78.6% 42.6%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.64 59.0 4.58e-01 100.0% 59.6%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.64 54.0 4.96e-01 100.0% 83.1%
3rbtA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 54.0 4.34e-01 100.0% 65.8%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 52.0 4.19e-01 100.0% 69.5%
3e0sA00 1.40.20.10 Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain 0.61 51.0 3.28e-01 100.0% 20.3%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 50.0 4.29e-01 98.2% 64.9%
4muoA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 44.0 4.19e-01 94.6% 68.1%
1vquA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 45.0 4.36e-01 94.6% 74.6%
1j1jA02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.58 47.0 4.28e-01 100.0% 82.4%
2jvgA00 1.10.10.1270 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV 0.57 46.0 4.28e-01 96.4% 70.8%
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.57 48.0 3.78e-01 100.0% 50.0%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 49.0 4.10e-01 100.0% 78.2%
2jbwA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.56 46.0 3.95e-01 100.0% 64.1%
3frrA00 1.20.1260.60 Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 0.56 46.0 3.35e-01 100.0% 31.2%
2elcA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 42.0 4.03e-01 85.7% 80.6%
5kdiA00 1.10.3520.10 Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein 0.54 45.0 3.15e-01 100.0% 65.4%
1nstA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.77e-01 89.3% 83.0%
4eadA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.54 45.0 3.76e-01 100.0% 89.7%
3pubA01 1.10.10.2400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Lepidopteran low molecular weight (30 kD) lipoprotein, N-terminal domain 0.53 44.0 4.11e-01 100.0% 87.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3281476 101.1.1.440 alpha arrays › HTH › HTH › Three-helical HTH › DUF7639 0.95 87.0 7.56e-01 98.2% 68.8%
3387959 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.82 61.0 4.46e-01 78.6% 77.1%
5083305 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.81 60.0 4.34e-01 78.6% 81.4%
3237436 3281.1.1.0 alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related 0.80 59.0 4.57e-01 78.6% 87.5%
4238791 604.15.1.3 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › GA_3 0.80 65.0 6.81e-01 98.2% 98.0%
4441814 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.79 65.0 6.64e-01 100.0% 90.9%
3588874 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.79 59.0 6.24e-01 94.6% 90.0%
4031198 604.15.1.2 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › Sbi-IV 0.76 65.0 6.58e-01 100.0% 94.5%
3705329 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.75 69.0 5.59e-01 100.0% 84.0%
4037022 604.15.1.1 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › efb-c 0.75 66.0 6.70e-01 100.0% 98.2%
3491443 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.75 55.0 5.93e-01 85.7% 97.8%
4019857 316.1.1.63 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF7582 0.75 68.0 4.59e-01 100.0% 34.7%
4034568 604.15.1.1 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like › efb-c 0.75 66.0 5.81e-01 100.0% 68.4%
4033104 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.74 62.0 5.94e-01 100.0% 78.5%
4030122 2002.1.1.17 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PEPcase 0.74 64.0 3.49e-01 96.4% 92.1%
3591941 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.74 68.0 5.51e-01 100.0% 88.0%
3580322 604.17.1.2 alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like › PF30475 0.74 67.0 6.05e-01 100.0% 84.0%
4955412 316.1.1.18 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › AbiEii 0.74 60.0 4.16e-01 98.2% 27.9%
3709914 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 67.0 4.03e-01 100.0% 20.6%
3707839 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 67.0 4.45e-01 100.0% 35.6%
4968263 1.1.5.91 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C 0.73 64.0 4.21e-01 96.4% 25.0%
4987589 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 65.0 3.84e-01 100.0% 15.7%
4930773 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.72 64.0 4.42e-01 98.2% 81.1%
3611527 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.72 64.0 4.82e-01 100.0% 51.1%
4524825 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.72 65.0 5.39e-01 100.0% 72.6%
4401248 633.16.1.0 alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like 0.72 64.0 5.47e-01 100.0% 62.2%
3914445 109.4.1.267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CIP2A_N 0.71 64.0 3.56e-01 100.0% 10.2%
4572376 109.4.1.267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CIP2A_N 0.71 64.0 3.64e-01 100.0% 12.6%
3612915 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.71 63.0 5.12e-01 100.0% 86.7%
4167208 604.15.1.0 alpha bundles › Spectrin repeat-like › Efb C-domain-like › Efb C-domain-like 0.71 59.0 5.79e-01 100.0% 85.0%
3931268 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 63.0 4.16e-01 100.0% 33.8%
3973500 601.1.2.144 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › HBM 0.70 63.0 4.93e-01 100.0% 63.5%
4379330 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.70 58.0 5.70e-01 100.0% 85.0%
3495345 3104.1.1.1 alpha bundles › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Putative ubiquinone biosynthesis protein › Coq4 0.69 55.0 4.04e-01 92.9% 32.3%
4585380 632.2.1.2 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › B 0.69 57.0 4.64e-01 100.0% 48.6%
1713219 601.4.1.5 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › HBM 0.69 61.0 4.85e-01 100.0% 63.7%
3578262 109.4.1.267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CIP2A_N 0.69 62.0 3.52e-01 100.0% 11.9%
4647884 601.2.1.7 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › HBM 0.68 62.0 4.62e-01 100.0% 54.1%
5063259 601.33.1.1 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › CHAD 0.68 61.0 4.71e-01 100.0% 50.4%
3623650 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.68 59.0 4.10e-01 100.0% 47.9%
3935887 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.68 58.0 3.21e-01 98.2% 8.5%
4015471 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 60.0 4.71e-01 98.2% 68.4%
5052922 601.4.1.0 alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains 0.65 56.0 4.47e-01 100.0% 62.5%
4604117 5069.1.1.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes 0.65 56.0 4.53e-01 100.0% 70.0%
3801633 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.64 58.0 4.19e-01 100.0% 63.9%
3958020 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 55.0 3.43e-01 100.0% 20.9%
3924801 109.4.1.1643 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 0.64 53.0 4.57e-01 98.2% 64.2%
5079439 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.62 52.0 4.24e-01 94.6% 81.9%
4024434 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.59 50.0 3.25e-01 98.2% 24.5%