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MT074146.1__QIG64751.1__SJC03_73__00073

Bact-Vir

MT074146.1__QIG64751.1__SJC03_73__00073

Identity

Accession:
MT074146 ↗
Kingdom:
phage

Quality

91.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacteroides_phage_SJC03

TaxID: 2710505

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-98
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6q2eA01 3.40.50.11840 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Diphthamide synthesis DPH1/DPH2 domain 1 0.56 30.0 3.20e-01 86.7% 56.3%
3wxmB03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.56 32.0 3.15e-01 86.7% 50.5%
3zokA01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 33.0 2.79e-01 86.7% 34.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981677 2004.1.1.22 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.69 59.0 4.30e-01 100.0% 36.3%
D2 high residues 108-189
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.72 58.0 5.53e-01 86.6% 84.0%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 56.0 4.66e-01 98.8% 74.1%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 54.0 5.10e-01 95.1% 90.9%
1xjkA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.63 43.0 2.55e-01 70.7% 62.0%
8h72B01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 53.0 3.62e-01 100.0% 50.8%
2hepA00 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 28.0 3.68e-01 95.1% 81.0%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 52.0 4.97e-01 97.6% 93.8%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.60 43.0 4.65e-01 79.3% 95.5%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 50.0 4.35e-01 95.1% 100.0%
2e9fB01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.59 44.0 4.21e-01 79.3% 75.0%
1r6bX03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.58 49.0 4.86e-01 95.1% 96.6%
3pl2A01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 51.0 3.63e-01 100.0% 55.5%
2mqaA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.57 44.0 3.88e-01 84.1% 56.0%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 43.0 4.71e-01 89.0% 98.5%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 44.0 4.00e-01 92.7% 64.6%
1dqeA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 39.0 3.38e-01 82.9% 46.7%
2g36A02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.54 36.0 3.30e-01 82.9% 51.4%
6zhiB02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 38.0 3.84e-01 74.4% 78.3%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.53 41.0 3.20e-01 85.4% 98.0%
1op1A00 1.20.81.10 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain 0.53 37.0 3.79e-01 74.4% 84.1%
6z74C02 1.20.120.530 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like 0.53 40.0 3.32e-01 84.1% 73.6%
1f0jA00 1.10.1300.10 Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain 0.52 43.0 2.94e-01 95.1% 60.7%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.52 40.0 3.69e-01 82.9% 75.7%
1e29A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.52 41.0 3.52e-01 86.6% 85.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3935386 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 46.0 5.04e-01 73.2% 86.2%
4398425 148.1.3.26 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_9 0.64 49.0 4.71e-01 86.6% 71.6%
3269328 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 56.0 3.57e-01 100.0% 20.8%
5023341 4009.1.1.1 ↗ alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom 0.60 44.0 4.73e-01 82.9% 92.9%
4932665 181.1.1.0 ↗ alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.59 46.0 4.49e-01 85.4% 91.1%
3282088 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.58 49.0 4.67e-01 91.5% 81.1%
3587982 4125.1.1.3 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like › DUF1129 0.55 43.0 4.49e-01 87.8% 97.3%
4032782 4125.1.1.0 ↗ alpha superhelices › BH3980-like › BH3980-like › BH3980-like 0.54 40.0 4.32e-01 79.3% 98.5%
168976 2006.1.1.44 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.54 41.0 3.04e-01 82.9% 30.6%
5004921 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.54 38.0 3.96e-01 73.2% 88.0%
5001838 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.54 45.0 3.69e-01 92.7% 72.7%
3388952 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 47.0 3.53e-01 100.0% 46.0%
3387406 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.52 44.0 4.08e-01 96.3% 74.3%
4991480 103.1.1.144 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DUF6955 0.52 43.0 4.07e-01 95.1% 91.4%
52405 171.1.1.0 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like 0.52 40.0 3.56e-01 85.4% 81.5%
4879352 1030.1.1.1 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A 0.51 35.0 3.00e-01 74.4% 41.3%
3859136 140.1.1.5 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon_1 0.51 42.0 3.10e-01 90.2% 60.0%
4981250 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.51 36.0 3.44e-01 73.2% 84.2%
None — 0.51 38.0 3.35e-01 80.5% 87.9%
4970028 5065.1.1.3 ↗ alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.50 43.0 3.02e-01 100.0% 91.9%
3742359 3361.1.1.1 ↗ alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head 0.50 43.0 4.11e-01 95.1% 92.6%
4349885 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.50 43.0 2.65e-01 100.0% 53.9%
3567727 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.50 43.0 3.12e-01 100.0% 58.1%