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MT074146.1__QIG64808.1__SJC03_130__00130
Bact-VirMT074146.1__QIG64808.1__SJC03_130__00130
Identity
- Accession:
- MT074146 ↗
- Kingdom:
- phage
Quality
90.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-54
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.83 | 75.0 | 6.60e-01 | 100.0% | 75.0% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.74 | 65.0 | 6.04e-01 | 98.1% | 80.6% |
| 1x5aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.74 | 54.0 | 4.52e-01 | 100.0% | 46.2% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.70 | 56.0 | 5.79e-01 | 98.1% | 96.0% |
| 3hvnA01 | 3.90.840.10 | Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain | 0.69 | 58.0 | 4.18e-01 | 100.0% | 39.5% |
| 1mt1B00 | 3.50.20.10 | Alpha Beta › 3-Layer(bba) Sandwich › Pyruvoyl-Dependent Histidine Decarboxylase; Chain B › Pyruvoyl-Dependent Histidine Decarboxylase, subunit B | 0.68 | 57.0 | 4.64e-01 | 100.0% | 61.6% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.67 | 46.0 | 3.61e-01 | 100.0% | 33.6% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 51.0 | 4.44e-01 | 100.0% | 54.1% |
| 2i44B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.66 | 55.0 | 3.43e-01 | 96.2% | 32.0% |
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.65 | 53.0 | 4.59e-01 | 100.0% | 68.5% |
| 4qd4A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.64 | 44.0 | 2.69e-01 | 73.6% | 93.8% |
| 7pupA01 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 46.0 | 3.12e-01 | 79.2% | 84.7% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 53.0 | 4.37e-01 | 100.0% | 60.8% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.62 | 42.0 | 2.70e-01 | 73.6% | 82.4% |
| 1w99A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 52.0 | 3.62e-01 | 100.0% | 39.3% |
| 4yo1A01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 53.0 | 4.49e-01 | 100.0% | 91.0% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.61 | 43.0 | 2.67e-01 | 77.4% | 11.6% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.61 | 53.0 | 4.20e-01 | 100.0% | 49.1% |
| 1f6fB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 45.0 | 3.87e-01 | 100.0% | 47.4% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 50.0 | 3.72e-01 | 100.0% | 41.4% |
| 1n26A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 51.0 | 4.16e-01 | 100.0% | 49.5% |
| 2iboA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 49.0 | 4.26e-01 | 98.1% | 91.0% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.58 | 48.0 | 4.07e-01 | 96.2% | 90.4% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 48.0 | 4.07e-01 | 100.0% | 80.6% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 49.0 | 3.55e-01 | 100.0% | 49.7% |
| 5lvxC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.58 | 51.0 | 4.04e-01 | 100.0% | 99.1% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.58 | 47.0 | 4.46e-01 | 100.0% | 75.8% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.58 | 47.0 | 4.00e-01 | 96.2% | 54.7% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 42.0 | 3.07e-01 | 81.1% | 36.1% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 47.0 | 3.44e-01 | 100.0% | 42.2% |
| 3pvlA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 44.0 | 3.79e-01 | 90.6% | 93.8% |
| 2d9rA00 | 2.40.30.100 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › AF2212/PG0164-like | 0.56 | 46.0 | 4.03e-01 | 96.2% | 62.4% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 44.0 | 4.45e-01 | 100.0% | 98.2% |
| 5ylyA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.56 | 46.0 | 3.76e-01 | 100.0% | 61.6% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.55 | 45.0 | 3.68e-01 | 100.0% | 46.8% |
| 6vgwA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.55 | 48.0 | 3.54e-01 | 100.0% | 90.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 44.0 | 3.81e-01 | 96.2% | 57.6% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.55 | 42.0 | 4.24e-01 | 100.0% | 98.0% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 3.69e-01 | 100.0% | 53.1% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 44.0 | 3.76e-01 | 96.2% | 56.4% |
| 3lnlB02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.76e-01 | 98.1% | 96.6% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.86e-01 | 100.0% | 95.1% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 44.0 | 3.15e-01 | 100.0% | 33.1% |
| 4bfkA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.52 | 42.0 | 3.39e-01 | 100.0% | 50.0% |
| 1b04A02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.52 | 42.0 | 3.60e-01 | 100.0% | 54.5% |
| 5cadA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 43.0 | 3.02e-01 | 100.0% | 31.1% |
| 1r0uA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 40.0 | 3.18e-01 | 98.1% | 93.7% |
| 3zn4A00 | 2.60.120.1180 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.04e-01 | 90.6% | 75.8% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.50 | 40.0 | 3.21e-01 | 100.0% | 46.2% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.50 | 44.0 | 3.49e-01 | 100.0% | 84.8% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4977431 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.90 | 81.0 | 7.55e-01 | 100.0% | 80.0% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.86 | 80.0 | 7.67e-01 | 100.0% | 98.3% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.86 | 79.0 | 7.09e-01 | 100.0% | 81.4% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.85 | 78.0 | 6.13e-01 | 100.0% | 54.3% |
| 2106285 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.84 | 76.0 | 5.91e-01 | 100.0% | 53.7% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.82 | 75.0 | 7.44e-01 | 100.0% | 100.0% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.76 | 63.0 | 6.49e-01 | 100.0% | 96.0% |
| 4354768 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.76 | 52.0 | 4.72e-01 | 98.1% | 54.3% |
| 223776 | 3115.4.1.1 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 | 0.74 | 66.0 | 5.99e-01 | 100.0% | 77.5% |
| 5081134 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.73 | 59.0 | 5.75e-01 | 98.1% | 81.7% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.72 | 56.0 | 5.91e-01 | 100.0% | 100.0% |
| 5014007 | 3115.2.1.0 ↗ | a+b two layers › GP2-like › GP2 › GP2 | 0.72 | 58.0 | 5.76e-01 | 100.0% | 90.9% |
| 3626585 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 52.0 | 3.91e-01 | 100.0% | 32.1% |
| 3238927 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.69 | 52.0 | 4.32e-01 | 100.0% | 45.0% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.69 | 56.0 | 5.80e-01 | 100.0% | 98.0% |
| 4968352 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.69 | 57.0 | 4.94e-01 | 100.0% | 60.0% |
| 5007155 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.67 | 50.0 | 5.39e-01 | 98.1% | 95.6% |
| 3414237 | 382.1.1.6 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR | 0.67 | 57.0 | 4.53e-01 | 100.0% | 46.0% |
| 5047755 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.64 | 50.0 | 3.90e-01 | 96.2% | 35.7% |
| 3941935 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 53.0 | 4.28e-01 | 100.0% | 49.6% |
| 3568886 | 2492.1.1.29 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like | 0.63 | 53.0 | 3.63e-01 | 100.0% | 25.6% |
| 4110334 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 50.0 | 4.36e-01 | 98.1% | 56.5% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.62 | 51.0 | 3.80e-01 | 96.2% | 45.6% |
| 3390562 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.61 | 48.0 | 4.44e-01 | 100.0% | 67.1% |
| 5067811 | 219.1.1.13 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core | 0.61 | 52.0 | 3.59e-01 | 98.1% | 47.4% |
| 3486122 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 51.0 | 3.85e-01 | 100.0% | 65.7% |
| 4378053 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.60 | 50.0 | 3.87e-01 | 98.1% | 60.8% |
| 3175359 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 3.63e-01 | 96.2% | 59.3% |
| 4180988 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.58 | 48.0 | 3.20e-01 | 98.1% | 22.1% |
| 2496895 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 4.02e-01 | 98.1% | 54.6% |
| 4448678 | 4.1.1.307 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26132 | 0.56 | 44.0 | 4.12e-01 | 98.1% | 98.7% |
| 3434515 | 109.4.1.2925 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, PPR_long, E_motif | 0.56 | 47.0 | 2.67e-01 | 98.1% | 13.8% |
| 3583600 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.56 | 49.0 | 4.33e-01 | 100.0% | 66.3% |
| 5011866 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.56 | 45.0 | 2.97e-01 | 94.3% | 20.4% |
| 3681440 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.56 | 45.0 | 2.67e-01 | 98.1% | 17.4% |
| 3330921 | 109.4.1.1285 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif | 0.55 | 45.0 | 2.77e-01 | 98.1% | 23.5% |
| 4968576 | 1.1.2.16 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD | 0.55 | 47.0 | 3.69e-01 | 100.0% | 99.2% |
| 3597730 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 46.0 | 3.20e-01 | 100.0% | 39.0% |
| 5005349 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 44.0 | 2.62e-01 | 98.1% | 11.4% |
| 3816922 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.53 | 42.0 | 2.77e-01 | 98.1% | 59.6% |
| 3378740 | 109.4.1.1291 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif | 0.52 | 41.0 | 2.30e-01 | 96.2% | 10.0% |
| 3811561 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.52 | 41.0 | 2.28e-01 | 86.8% | 7.4% |
| 3513507 | 7508.1.1.1 ↗ | a/b three-layered sandwiches › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › O-glucosyltransferase rumi N-terminal domain › Glyco_transf_90 | 0.51 | 40.0 | 3.01e-01 | 84.9% | 58.5% |
| 3637444 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.51 | 42.0 | 2.75e-01 | 100.0% | 20.0% |