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MT074146.1__QIG64869.1__SJC03_194__00191

Bact-Vir

MT074146.1__QIG64869.1__SJC03_194__00191

Identity

Accession:
MT074146 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-181_340-350
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04371.21 best PAD_porph 27.4 2.80e-06 94.8% 43.8%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xknA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.81 78.0 6.17e-01 100.0% 98.0%
1zbrA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.77 73.0 5.89e-01 98.4% 99.1%
1vkpB00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.77 74.0 5.83e-01 100.0% 98.9%
6b10A00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.74 71.0 5.86e-01 100.0% 98.7%
4gicA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.60 38.0 4.28e-01 91.1% 82.6%
1rxxC01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.59 55.0 4.51e-01 97.9% 98.2%
3fkfD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 35.0 4.13e-01 96.9% 84.7%
6p0wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 35.0 4.06e-01 97.4% 86.7%
2ljaA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 34.0 3.76e-01 93.2% 74.3%
3drnB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 34.0 3.84e-01 97.9% 78.7%
4eo3A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 33.0 3.84e-01 93.8% 83.3%
3ewlB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 33.0 3.88e-01 97.4% 85.4%
3eurA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 33.0 3.84e-01 97.4% 83.6%
3r7wA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 37.0 3.79e-01 99.0% 73.6%
3icsA03 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.53 26.0 3.47e-01 79.2% 86.3%
1vjtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 31.0 3.84e-01 92.7% 97.4%
3b48F00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.51 32.0 3.72e-01 96.9% 86.7%
1zcjA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 42.0 4.35e-01 93.2% 92.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
7267 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.81 78.0 6.17e-01 100.0% 98.0%
4604011 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.77 74.0 5.78e-01 99.5% 98.9%
3285366 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.77 73.0 5.91e-01 99.0% 99.7%
7266 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.77 72.0 5.85e-01 97.4% 100.0%
134965 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.77 74.0 5.77e-01 100.0% 97.3%
4323344 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.60 31.0 3.52e-01 72.4% 63.4%
3500810 2008.1.1.68 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PND 0.60 33.0 4.10e-01 78.1% 85.0%
4977245 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.59 35.0 4.45e-01 88.5% 99.1%
3941663 2487.1.1.24 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › EutA 0.58 34.0 3.77e-01 79.2% 72.0%
4191964 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.54 40.0 4.01e-01 94.8% 74.9%
169328 2485.1.1.37 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_2 0.53 33.0 3.83e-01 97.4% 84.8%
4997354 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.53 38.0 3.82e-01 94.3% 72.7%
4529181 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.52 39.0 3.08e-01 95.3% 38.7%
4225860 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.52 38.0 3.84e-01 94.8% 72.5%
223631 2484.1.1.4 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.52 37.0 3.62e-01 72.4% 90.0%
4324425 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.52 39.0 3.08e-01 95.8% 37.0%
4320365 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.51 38.0 3.69e-01 94.8% 68.4%
3472391 7512.1.1.53 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › ALG11_N 0.51 44.0 3.85e-01 89.6% 84.0%
4413821 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.51 37.0 3.65e-01 93.8% 68.6%
4989148 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.51 33.0 3.85e-01 95.3% 91.9%
4976955 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.50 34.0 3.04e-01 73.4% 48.7%
293551 2003.1.1.155 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N, F420_oxidored 0.50 42.0 4.11e-01 93.2% 79.6%
5007769 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.50 42.0 3.88e-01 88.5% 93.1%
D2 medium residues 182-339
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04371.21 best PAD_porph 44.9 1.30e-11 100.0% 48.8%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yt9A01 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.84 76.0 5.89e-01 100.0% 47.5%
6b10A00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.84 75.0 5.79e-01 100.0% 46.7%
1vkpB00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.84 79.0 5.88e-01 100.0% 50.1%
1xknA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.81 76.0 5.75e-01 100.0% 45.6%
1zbrA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.81 76.0 5.82e-01 100.0% 47.8%
1bwdA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.67 62.0 4.76e-01 100.0% 46.3%
2c6zA00 3.75.10.10 Alpha Beta › 5-stranded Propeller › L-arginine/glycine Amidinotransferase; Chain A › L-arginine/glycine Amidinotransferase; Chain A 0.64 59.0 4.82e-01 100.0% 56.8%
1pdaA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 32.0 3.89e-01 72.2% 74.3%
7c2gG01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.61 34.0 4.43e-01 80.4% 97.7%
2xr1A01 3.30.300.230 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.60 27.0 3.33e-01 70.3% 66.0%
3bypA00 3.30.70.1350 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain 0.60 31.0 4.16e-01 70.9% 96.3%
3bioA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 30.0 3.45e-01 76.6% 64.9%
6ljcC01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 35.0 4.18e-01 81.6% 88.8%
3ux3A01 3.30.300.130 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) 0.57 32.0 4.07e-01 71.5% 90.7%
4hlbA00 3.30.70.2960 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 33.0 4.18e-01 72.8% 98.9%
4tpsD00 3.30.300.180 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › DnaA, N-terminal domain 0.55 29.0 3.86e-01 70.3% 95.2%
7whfC02 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 32.0 3.98e-01 75.3% 91.0%
4m1aA00 3.30.429.10 Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor 0.55 33.0 3.91e-01 86.1% 86.9%
4r0mA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.55 33.0 3.92e-01 72.2% 87.0%
1j72A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 37.0 4.31e-01 91.1% 98.2%
3pbkA02 3.30.300.30 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain 0.54 34.0 4.00e-01 74.7% 91.7%
1ylqA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 31.0 3.91e-01 76.6% 95.7%
2e3tB03 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.53 21.0 3.05e-01 70.3% 83.6%
2kgsA01 3.40.1520.20 Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › 0.52 34.0 3.92e-01 73.4% 93.6%
7xjrA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 38.0 3.11e-01 77.2% 88.5%
8gtzA03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.50 42.0 4.03e-01 89.9% 100.0%
1wotA00 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.50 30.0 3.62e-01 72.8% 92.9%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3732990 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.85 80.0 6.07e-01 100.0% 48.4%
4604011 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.85 80.0 5.94e-01 100.0% 49.3%
3285366 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.84 80.0 6.06e-01 100.0% 49.6%
1564029 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.84 76.0 5.39e-01 100.0% 35.5%
4410159 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.84 79.0 5.97e-01 100.0% 47.0%
4886705 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.84 79.0 5.98e-01 100.0% 47.0%
134965 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.84 79.0 5.85e-01 100.0% 49.3%
7266 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.82 78.0 5.98e-01 100.0% 49.1%
7267 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.81 76.0 5.75e-01 100.0% 45.6%
3282708 232.1.1.4 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein › PAD_porph 0.80 75.0 5.72e-01 100.0% 48.5%
3980816 3261.1.1.0 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb 0.70 32.0 4.59e-01 72.2% 92.0%
5028395 232.1.1.0 a+b duplicates or obligate multimers › Pentein › Pentein › Pentein 0.69 65.0 4.83e-01 100.0% 49.2%
4942543 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.67 29.0 4.33e-01 70.3% 96.9%
5028785 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.67 30.0 4.36e-01 72.2% 98.5%
4975658 327.11.1.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) 0.63 28.0 4.07e-01 72.2% 96.9%
4927029 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.62 30.0 4.22e-01 82.9% 100.0%
3386658 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.62 30.0 2.96e-01 70.3% 41.7%
4985202 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.60 38.0 4.66e-01 92.4% 100.0%
4994961 327.11.1.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_7 0.59 31.0 3.92e-01 85.4% 85.6%
384378 327.6.1.2 a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.59 33.0 3.94e-01 72.8% 80.4%
3963230 3261.1.1.1 a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › BON 0.58 30.0 4.07e-01 70.3% 97.5%
4007060 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.58 33.0 4.07e-01 88.0% 90.5%
4422829 327.5.1.10 a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › PF27533 0.58 35.0 4.39e-01 86.1% 100.0%
3988694 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.57 32.0 4.04e-01 80.4% 94.4%
5011218 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 30.0 3.91e-01 73.4% 94.1%
4954525 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 31.0 3.93e-01 71.5% 92.2%
3595358 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 32.0 4.03e-01 88.6% 95.6%
3388155 327.10.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related 0.56 28.0 3.86e-01 71.5% 100.0%
4081051 327.10.1.3 a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related › DnaA_N 0.56 28.0 3.85e-01 74.1% 100.0%
5051422 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.56 31.0 3.98e-01 72.2% 95.6%
4988287 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.55 31.0 3.93e-01 86.7% 94.4%
3699798 327.7.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.55 31.0 3.91e-01 88.6% 95.6%
3243095 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.55 32.0 3.92e-01 73.4% 93.7%
4939318 327.7.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer 0.54 30.0 3.78e-01 88.0% 92.2%
4205732 327.9.1.1 a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain › KH_dom-like 0.52 30.0 3.57e-01 84.8% 82.9%
1669079 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.52 25.0 3.43e-01 74.7% 100.0%
4940595 2008.1.1.14 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr 0.51 32.0 3.97e-01 71.5% 100.0%