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MT074151.1__QIG65159.1__SJC13_32__00032

Bact-Vir

MT074151.1__QIG65159.1__SJC13_32__00032

Identity

Accession:
MT074151 ↗
Kingdom:
phage

Quality

83.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacteroides_phage_SJC13

TaxID: 2710510

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-62
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.89 40.0 2.35e-01 76.7% 7.2%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.72 50.0 3.56e-01 73.3% 35.6%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 48.0 4.86e-01 96.7% 72.9%
2cfuA01 3.60.15.30 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Metallo-beta-lactamase domain 0.64 52.0 3.22e-01 90.0% 89.4%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 44.0 2.78e-01 73.3% 20.2%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.63 47.0 2.93e-01 81.7% 22.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 51.0 4.09e-01 95.0% 76.9%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 47.0 4.04e-01 83.3% 57.0%
4jn7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 49.0 4.03e-01 90.0% 45.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 45.0 4.34e-01 98.3% 67.1%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.62 43.0 3.01e-01 71.7% 59.6%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.54e-01 88.3% 75.7%
1e3hA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.61 44.0 2.87e-01 75.0% 25.8%
2z04B03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.60 45.0 3.31e-01 85.0% 81.7%
2f96A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 53.0 3.69e-01 98.3% 92.5%
1a1aB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 42.0 3.70e-01 78.3% 69.6%
1nbwA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 42.0 3.29e-01 75.0% 45.5%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.60 45.0 3.89e-01 83.3% 59.8%
3k5iA03 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.59 47.0 3.38e-01 90.0% 82.3%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 47.0 3.42e-01 100.0% 84.2%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.57 39.0 3.07e-01 71.7% 35.3%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 43.0 3.65e-01 86.7% 100.0%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.57 51.0 4.75e-01 100.0% 81.3%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 40.0 3.08e-01 76.7% 74.5%
5o7oC01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.56 46.0 3.58e-01 88.3% 61.6%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 34.0 3.42e-01 70.0% 58.7%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.55 40.0 3.50e-01 83.3% 79.4%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.54 40.0 3.15e-01 85.0% 85.4%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 38.0 2.39e-01 78.3% 16.8%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 43.0 3.38e-01 93.3% 61.4%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.53 40.0 3.74e-01 90.0% 84.7%
7szeB01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.53 39.0 3.29e-01 81.7% 55.1%
1ehiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 45.0 3.42e-01 95.0% 93.1%
2pmaA01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.52 40.0 3.31e-01 90.0% 57.9%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.51 42.0 3.18e-01 90.0% 69.7%
1pcfA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.51 41.0 4.04e-01 100.0% 84.8%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 39.0 3.48e-01 91.7% 88.8%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5073213 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.79 49.0 3.20e-01 71.7% 17.3%
3589882 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.73 56.0 6.09e-01 85.0% 98.0%
3947082 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.72 56.0 4.88e-01 83.3% 56.7%
3487703 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 62.0 4.81e-01 100.0% 45.2%
4432847 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.69 52.0 3.52e-01 83.3% 25.1%
4549410 506.2.1.0 ↗ beta meanders › Colicin E3 ribonuclease domain-like › UvrB interaction domain › UvrB interaction domain 0.69 56.0 3.09e-01 88.3% 32.7%
4423306 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.69 46.0 4.30e-01 91.7% 56.0%
3272286 220.1.1.174 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.68 53.0 4.42e-01 90.0% 47.3%
4339993 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.68 47.0 4.11e-01 91.7% 47.8%
5007359 2484.1.1.101 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 0.68 55.0 5.24e-01 91.7% 75.7%
3518510 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.68 53.0 4.39e-01 85.0% 58.1%
3933294 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 51.0 4.31e-01 85.0% 58.1%
3577495 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 45.0 3.13e-01 90.0% 20.0%
4931302 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.66 45.0 4.83e-01 78.3% 86.0%
4547406 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.66 44.0 4.06e-01 91.7% 52.5%
3820521 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.66 50.0 3.22e-01 85.0% 29.8%
4025365 220.1.1.74 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PIG-H 0.65 51.0 4.28e-01 90.0% 48.2%
3321360 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.65 56.0 5.23e-01 96.7% 86.7%
3944846 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.64 53.0 4.36e-01 95.0% 53.0%
3843531 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 49.0 4.18e-01 85.0% 59.0%
4068131 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 43.0 3.78e-01 91.7% 45.3%
3839369 4.1.1.32 ↗ beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 45.0 4.11e-01 96.7% 56.2%
3777778 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 50.0 3.32e-01 90.0% 25.1%
3795991 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.62 50.0 4.17e-01 90.0% 61.0%
4492006 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.62 55.0 3.56e-01 100.0% 64.8%
3952939 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.61 46.0 4.30e-01 85.0% 65.3%
3937784 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.61 54.0 4.18e-01 98.3% 62.3%
3334247 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 50.0 4.20e-01 93.3% 59.1%
3866981 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.61 39.0 3.42e-01 70.0% 43.8%
3690349 5.1.11.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed 0.60 42.0 2.45e-01 73.3% 13.0%
3975472 1104.1.1.1 ↗ a+b complex topology › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › Helicase Cch N-terminal domain › DUF927 0.60 40.0 2.98e-01 96.7% 27.1%
3883088 252.1.1.1 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.60 41.0 3.97e-01 73.3% 81.4%
4394739 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 47.0 4.49e-01 91.7% 74.3%
3958768 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 4.13e-01 85.0% 62.5%
4500300 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.59 53.0 3.21e-01 100.0% 38.4%
3170899 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.58 44.0 3.72e-01 85.0% 47.6%
3845942 9.13.1.7 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like › Pep_M12B_propep 0.57 39.0 3.19e-01 70.0% 55.0%
4983382 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.45e-01 85.0% 41.5%
5076410 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 51.0 3.12e-01 100.0% 40.0%
4041632 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.57 47.0 3.72e-01 100.0% 91.0%
4982659 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.57 51.0 3.13e-01 100.0% 41.4%
4981192 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 2.94e-01 86.7% 22.0%
5044978 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.56 38.0 3.54e-01 70.0% 85.3%
5081878 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 44.0 2.77e-01 91.7% 35.0%
3388362 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 49.0 2.79e-01 100.0% 12.7%
4976869 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 45.0 3.81e-01 96.7% 90.4%
4988803 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.56 50.0 3.01e-01 100.0% 40.3%
5071253 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.55 42.0 3.20e-01 83.3% 90.0%
3612106 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 49.0 4.50e-01 98.3% 88.0%
3626321 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.53 41.0 4.31e-01 96.7% 92.7%
3253183 328.8.1.1 ↗ a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 0.51 42.0 2.81e-01 93.3% 50.6%
4032422 5.1.2.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Phage_RBD_prop 0.51 42.0 2.78e-01 100.0% 41.9%
3517323 3131.1.1.2 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN 0.51 38.0 3.15e-01 80.0% 45.5%
3591097 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 40.0 2.71e-01 90.0% 20.4%
3969410 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.51 40.0 3.28e-01 90.0% 66.4%
3650904 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 40.0 3.61e-01 96.7% 97.9%