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MT074469.1__QIQ61682.1__rabagast_4__00004

Bact-Vir

MT074469.1__QIQ61682.1__rabagast_4__00004

Identity

Accession:
MT074469 ↗
Kingdom:
phage

Quality

81.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Kuttervirus› Salmonella_phage_rabagast

TaxID: 2713314

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91
PDB
Domain cluster: rep: MZ501051.1__QXV76169.1__bas01_0038__00038__D174-271
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18668.7 best Tail_spike_N 88.8 2.70e-25 74.4% 98.6%
D2 medium residues 95-153
PDB
Domain cluster: rep: NC_049504.1__YP_009888327.1__HYQ34_gp005__00005__D498-552
D3 medium residues 154-368_380-432
PDB
Domain cluster: rep: KR296692.1__AKJ73657.1__SP38_55__00055__D191-456
D4 medium residues 433-515
PDB
Domain cluster: rep: IMGVR_UViG_3300028602_002087-3300028602-Ga0265294_100067364__D500-558
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.65 41.0 3.30e-01 100.0% 33.1%
4hwvB00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.62 56.0 3.44e-01 100.0% 20.3%
2z7xB00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.61 46.0 2.86e-01 100.0% 13.1%
2ht1A02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 53.0 3.84e-01 97.6% 57.3%
1pyoC00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 50.0 4.05e-01 100.0% 78.3%
3e4cB00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 48.0 3.42e-01 100.0% 49.4%
2pljA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.52 44.0 3.34e-01 100.0% 45.4%
3votA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 32.0 3.08e-01 97.6% 51.5%
2hoxA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 35.0 2.67e-01 100.0% 28.1%
4q82A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 41.0 2.98e-01 100.0% 30.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2434107 207.9.1.8 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Pentapeptide, Pentapeptide_3, Pentapeptide_4 0.74 43.0 3.24e-01 94.0% 25.5%
3699914 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.72 50.0 4.64e-01 100.0% 57.1%
3716144 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.71 50.0 3.90e-01 100.0% 34.7%
5040589 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.68 38.0 3.36e-01 94.0% 36.0%
2701717 207.2.1.20 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_3 0.67 59.0 3.79e-01 100.0% 20.6%
3273051 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.67 61.0 4.19e-01 100.0% 37.0%
4069065 207.9.1.4 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats › Involucrin 0.66 40.0 3.31e-01 95.2% 33.3%
3572624 207.1.1.58 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRRCT,LRR_8 0.61 46.0 3.02e-01 100.0% 17.7%
4952811 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 55.0 3.74e-01 100.0% 42.5%
3815417 207.1.1.100 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8+LRR_14 0.59 46.0 3.10e-01 100.0% 20.6%
2526446 1160.1.1.1 ↗ beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N 0.57 44.0 3.52e-01 98.8% 40.6%
4818375 312.1.1.0 ↗ a+b three layers › HIT-like › HIT-related › HIT-related 0.56 50.0 4.42e-01 100.0% 82.1%
5082237 2488.1.1.1 ↗ a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.56 37.0 3.16e-01 91.6% 41.0%
3786676 207.4.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › TBCC 0.54 40.0 3.26e-01 100.0% 42.6%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.53 41.0 4.30e-01 91.6% 93.3%
5068498 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.52 43.0 3.19e-01 94.0% 34.9%
3165270 207.2.1.10 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin 0.52 43.0 3.20e-01 100.0% 47.7%
3575441 7579.1.1.3 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9 0.52 45.0 3.13e-01 100.0% 38.3%
3215544 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.51 43.0 3.46e-01 100.0% 46.5%
5032703 207.14.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A › Bactofilin 0.51 37.0 3.37e-01 100.0% 56.5%
D5 medium residues 516-656
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kh3A00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.66 45.0 3.10e-01 100.0% 19.9%
2pygA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.65 60.0 4.38e-01 100.0% 41.2%
1k4zA00 2.160.20.70 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.60 47.0 4.54e-01 100.0% 74.5%
1rwrA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.56 51.0 4.03e-01 100.0% 71.4%
1e5tA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 44.0 3.34e-01 93.6% 57.1%
1ea0A04 2.160.20.60 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Glutamate synthase, alpha subunit, C-terminal domain 0.51 46.0 3.76e-01 100.0% 70.3%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3459646 207.4.1.2 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › C-CAP/cofactor C-like › C-CAP/cofactor C-like › CAP_C 0.74 47.0 4.39e-01 100.0% 52.7%
3686362 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.72 67.0 5.43e-01 100.0% 75.7%
4028784 207.9.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats 0.69 42.0 4.77e-01 99.3% 80.0%
3335252 207.2.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Glyco_hydro_28 0.68 63.0 5.65e-01 100.0% 72.3%
3629898 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.67 36.0 4.73e-01 73.0% 100.0%
5034080 207.2.2.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › beta-helix domain of fiber adhesin 0.64 46.0 5.12e-01 94.3% 93.6%
3374610 207.2.1.3 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pectate_lyase_4 0.64 60.0 5.02e-01 100.0% 69.7%
3803729 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.64 29.0 4.01e-01 97.9% 89.2%
2163978 207.10.1.1 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Arctic yeast antifreeze protein › Arctic yeast antifreeze protein › Ice_binding 0.63 44.0 3.70e-01 99.3% 42.9%
3546698 207.6.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C 0.59 48.0 4.62e-01 99.3% 76.2%
3483229 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.59 53.0 3.69e-01 100.0% 60.0%
3959841 207.8.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD 0.58 53.0 3.82e-01 100.0% 40.0%
4189249 207.1.1.95 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.58 47.0 3.52e-01 100.0% 34.4%
4025775 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.57 39.0 4.25e-01 100.0% 85.2%
4406918 207.6.1.16 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP 0.55 45.0 4.71e-01 100.0% 92.3%
4957202 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.54 42.0 4.17e-01 100.0% 77.3%
5038902 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 4.14e-01 70.2% 100.0%
4971789 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.52 39.0 4.05e-01 100.0% 84.6%
5033306 208.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes 0.51 33.0 3.42e-01 87.2% 67.4%
3711105 208.7.1.6 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG 0.51 34.0 3.32e-01 98.6% 62.0%
4011976 7516.1.1.0 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases 0.50 31.0 2.40e-01 74.5% 25.5%
3870521 207.14.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A 0.50 28.0 3.57e-01 79.4% 100.0%
D6 medium residues 657-766
PDB
Domain cluster: rep: NC_049504.1__YP_009888327.1__HYQ34_gp005__00005__D1073-1167