←Back to structures
MT074481.1__QIO03653.1__sidste_42__00042
Bact-VirMT074481.1__QIO03653.1__sidste_42__00042
Identity
- Accession:
- MT074481 ↗
- Kingdom:
- phage
Quality
65.3
mean pLDDT
Taxonomy
TaxID: 3430068
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-104
D2
high
residues 235-341
Domain cluster:
rep: SR-VP_2-4_scaffold_141_2548329_prodigal-single.1__X__X__00138__D61-144
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5eA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.71 | 41.0 | 4.84e-01 | 72.9% | 82.4% |
| 1kzlA02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.70 | 56.0 | 5.73e-01 | 99.1% | 89.1% |
| 3a35A01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.70 | 54.0 | 5.83e-01 | 100.0% | 95.7% |
| 1krhA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.69 | 58.0 | 6.08e-01 | 95.3% | 100.0% |
| 1z85A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.69 | 42.0 | 5.07e-01 | 73.8% | 97.0% |
| 3okxB00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.67 | 58.0 | 5.17e-01 | 92.5% | 85.9% |
| 4b3fX02 | 2.40.30.270 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.66 | 57.0 | 5.92e-01 | 96.3% | 100.0% |
| 2gpjA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 55.0 | 5.71e-01 | 98.1% | 100.0% |
| 1cqxA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 56.0 | 5.61e-01 | 97.2% | 99.1% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.62 | 54.0 | 5.41e-01 | 96.3% | 99.1% |
| 2eixA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 51.0 | 5.19e-01 | 94.4% | 94.3% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 41.0 | 4.27e-01 | 98.1% | 74.5% |
| 6e4nA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 36.0 | 4.17e-01 | 77.6% | 88.7% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 37.0 | 3.75e-01 | 72.0% | 63.9% |
| 1y7eA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.55 | 46.0 | 4.52e-01 | 93.5% | 100.0% |
| 2bolA03 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 34.0 | 3.62e-01 | 91.6% | 69.9% |
| 5a35A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 41.0 | 4.06e-01 | 78.5% | 95.5% |
| 1ydxA01 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.52 | 35.0 | 3.35e-01 | 100.0% | 57.0% |
| 2cq0A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 35.0 | 3.56e-01 | 73.8% | 69.9% |
| 2ijzA02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.52 | 43.0 | 4.38e-01 | 93.5% | 100.0% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.51 | 36.0 | 3.61e-01 | 74.8% | 93.9% |
| 4k4kA01 | 2.60.40.2620 | Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like | 0.51 | 39.0 | 3.76e-01 | 84.1% | 80.3% |
| 3fbkA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 41.0 | 3.78e-01 | 87.9% | 91.3% |
| 5jipA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.64e-01 | 100.0% | 83.3% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5082517 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.68 | 59.0 | 6.06e-01 | 99.1% | 100.0% |
| 4963598 | 1.1.7.150 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26503 | 0.68 | 45.0 | 5.27e-01 | 83.2% | 97.3% |
| 3243970 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 58.0 | 6.02e-01 | 99.1% | 99.0% |
| 4622734 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 57.0 | 5.94e-01 | 98.1% | 99.0% |
| 3247934 | 1.1.7.41 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › UPF1_1B_dom | 0.67 | 56.0 | 5.88e-01 | 97.2% | 100.0% |
| 3415428 | 1.1.7.69 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel | 0.66 | 54.0 | 5.53e-01 | 97.2% | 90.5% |
| 3273490 | 1.1.7.46 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B | 0.66 | 60.0 | 5.76e-01 | 97.2% | 95.8% |
| 3574784 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 60.0 | 6.01e-01 | 100.0% | 95.5% |
| 3741028 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.65 | 58.0 | 5.85e-01 | 97.2% | 97.1% |
| 4181458 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.65 | 57.0 | 5.72e-01 | 97.2% | 100.0% |
| 3423505 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 54.0 | 5.70e-01 | 95.3% | 100.0% |
| 3267872 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 53.0 | 5.00e-01 | 98.1% | 73.8% |
| 4968409 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 51.0 | 5.25e-01 | 95.3% | 91.0% |
| 4931402 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 58.0 | 5.78e-01 | 98.1% | 95.5% |
| 3805726 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 55.0 | 5.32e-01 | 94.4% | 100.0% |
| 3613165 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 55.0 | 5.56e-01 | 98.1% | 98.1% |
| 4028319 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 54.0 | 5.03e-01 | 94.4% | 85.2% |
| 3263988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 43.0 | 4.75e-01 | 95.3% | 88.2% |
| 3542883 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 56.0 | 5.15e-01 | 98.1% | 92.6% |
| 3284021 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 56.0 | 5.56e-01 | 99.1% | 100.0% |
| 3788348 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.62 | 56.0 | 5.50e-01 | 100.0% | 99.1% |
| 4267752 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.61 | 48.0 | 5.04e-01 | 94.4% | 94.7% |
| 3299228 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.61 | 54.0 | 4.93e-01 | 98.1% | 75.0% |
| 3280271 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.61 | 54.0 | 5.27e-01 | 98.1% | 91.3% |
| 3707901 | 1.1.7.7 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 | 0.60 | 52.0 | 5.30e-01 | 98.1% | 99.0% |
| 3932926 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.60 | 38.0 | 4.20e-01 | 75.7% | 81.2% |
| 3743935 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.58 | 37.0 | 4.16e-01 | 78.5% | 85.0% |
| 3771433 | 304.9.1.70 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_1 | 0.58 | 38.0 | 4.14e-01 | 73.8% | 83.5% |
| None | — | 0.57 | 34.0 | 2.16e-01 | 72.9% | 10.4% | |
| 3258282 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 41.0 | 4.34e-01 | 89.7% | 86.3% |
| 4200331 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.55 | 39.0 | 4.11e-01 | 81.3% | 84.0% |
| 3892185 | 304.9.1.70 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_1 | 0.54 | 37.0 | 3.95e-01 | 75.7% | 81.1% |
| 3228723 | 304.57.1.1 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 | 0.54 | 38.0 | 3.82e-01 | 73.8% | 73.6% |
| 3592906 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.53 | 38.0 | 3.91e-01 | 78.5% | 77.1% |
| 3273558 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 38.0 | 4.14e-01 | 87.9% | 92.9% |
| 3496273 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.53 | 38.0 | 3.35e-01 | 76.6% | 74.7% |
| 3258230 | 12.3.1.13 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C | 0.52 | 41.0 | 3.07e-01 | 85.0% | 84.0% |
| 3855366 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 38.0 | 3.85e-01 | 100.0% | 82.5% |
| 1713072 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.77e-01 | 89.7% | 81.4% |
| 4977038 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 36.0 | 3.73e-01 | 91.6% | 80.0% |
| 3524567 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 36.0 | 3.65e-01 | 99.1% | 76.2% |
| 3914461 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 35.0 | 3.27e-01 | 99.1% | 55.0% |
| 3221173 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.50 | 36.0 | 2.86e-01 | 99.1% | 32.8% |
D3
medium
residues 115-210
Domain cluster:
rep: EF177456.2__ABN47331.1__X__00030__D141-210
D4
medium
residues 344-439