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MT078988.1__QIG62131.1__P46FS4_65__00065

Bact-Vir

MT078988.1__QIG62131.1__P46FS4_65__00065

Identity

Accession:
MT078988 ↗
Kingdom:
phage

Quality

81.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Ackermannviridae› Agtrevirus› Salmonella_phage_P46FS4

TaxID: 2712940

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-70_201-210
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 42.0 3.58e-01 72.4% 80.8%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 48.0 3.18e-01 86.8% 38.0%
3wxeA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 3.10e-01 86.8% 42.2%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 45.0 3.96e-01 85.5% 67.3%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.57 43.0 3.76e-01 82.9% 74.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 3.81e-01 77.6% 86.5%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 38.0 3.78e-01 72.4% 91.6%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 42.0 3.83e-01 82.9% 82.4%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.57e-01 77.6% 59.8%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 44.0 3.21e-01 93.4% 57.1%
4lusB01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.53 38.0 3.16e-01 77.6% 63.8%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 37.0 3.99e-01 89.5% 90.5%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.20e-01 77.6% 48.5%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 39.0 3.94e-01 80.3% 92.0%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.10e-01 75.0% 86.4%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.36e-01 77.6% 76.1%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.53e-01 81.6% 71.6%
3hjhA02 3.30.2060.10 Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain 0.51 37.0 3.65e-01 80.3% 88.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 34.0 3.67e-01 73.7% 84.4%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.50 36.0 3.84e-01 78.9% 98.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4998726 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 45.0 4.45e-01 76.3% 82.5%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 40.0 4.20e-01 71.1% 74.3%
5064457 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 40.0 4.12e-01 77.6% 72.9%
4998870 4.1.1.483 ↗ beta barrels › SH3 › SH3 › SH3 › RRXRR 0.60 43.0 4.17e-01 76.3% 77.6%
4950396 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 37.0 4.23e-01 77.6% 89.1%
4305196 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.59 37.0 4.28e-01 73.7% 96.0%
4271087 4.1.1.444 ↗ beta barrels › SH3 › SH3 › SH3 › SplA 0.58 41.0 4.27e-01 75.0% 80.0%
4550511 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.58 33.0 4.02e-01 71.1% 95.6%
3782293 4.1.1.170 ↗ beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind 0.58 37.0 4.15e-01 82.9% 89.1%
4954284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.34e-01 75.0% 90.0%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 37.0 4.31e-01 77.6% 100.0%
224033 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.57 39.0 3.53e-01 73.7% 89.7%
3942297 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.57 45.0 3.96e-01 85.5% 69.0%
2772566 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.57 44.0 3.86e-01 84.2% 65.8%
4938445 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.56 42.0 3.56e-01 81.6% 65.2%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.56 43.0 3.75e-01 82.9% 63.6%
3976863 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.56 43.0 3.89e-01 82.9% 72.4%
4990290 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 38.0 3.82e-01 77.6% 70.7%
4992872 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 37.0 4.25e-01 77.6% 96.4%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.56 35.0 3.98e-01 73.7% 89.1%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.45e-01 80.3% 100.0%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.55 35.0 4.00e-01 75.0% 96.0%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 4.11e-01 77.6% 90.0%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 36.0 4.06e-01 77.6% 96.4%
4952887 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 36.0 4.01e-01 77.6% 94.5%
3963455 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.54 42.0 3.47e-01 86.8% 53.8%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.54 34.0 3.51e-01 76.3% 65.3%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.53 35.0 3.64e-01 72.4% 74.3%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.53 41.0 3.42e-01 86.8% 54.3%
4009281 219.1.1.65 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › GspA_C39-like 0.52 41.0 3.71e-01 86.8% 66.7%
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.52 42.0 3.93e-01 89.5% 73.7%
4527355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 37.0 3.91e-01 78.9% 94.2%
4963446 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.89e-01 75.0% 87.7%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 39.0 3.98e-01 84.2% 93.2%
4122525 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 39.0 3.97e-01 85.5% 94.7%
4151014 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.51 36.0 3.92e-01 77.6% 96.7%
4927036 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.50 35.0 3.45e-01 78.9% 67.1%
4476045 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.50 37.0 3.81e-01 80.3% 92.9%
3517728 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.50 34.0 3.51e-01 75.0% 75.7%
3244257 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 38.0 2.73e-01 84.2% 33.1%
4942673 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.50 38.0 3.40e-01 82.9% 73.6%
D2 medium residues 72-198
PDB
Domain cluster: rep: NC_071140.1__YP_010684638.1__PQZ67_gp67__00067__DFULL
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4wyqB00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 41.0 5.26e-01 89.8% 100.0%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 37.0 4.69e-01 91.3% 100.0%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 34.0 4.54e-01 90.6% 97.0%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 36.0 4.61e-01 92.9% 98.6%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.61 25.0 3.19e-01 96.1% 63.4%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 34.0 4.26e-01 92.1% 91.1%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 23.0 3.59e-01 83.5% 91.8%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 33.0 3.97e-01 92.1% 81.6%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 23.0 3.27e-01 86.6% 77.6%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 27.0 3.70e-01 87.4% 96.9%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 35.0 4.03e-01 94.5% 96.7%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.50 30.0 3.77e-01 90.6% 98.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5048895 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.79 34.0 4.88e-01 82.7% 86.7%
4497086 4100.1.1.5 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.75 35.0 4.38e-01 84.3% 71.2%
5028523 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.74 32.0 4.36e-01 83.5% 78.5%
3788141 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 37.0 4.74e-01 97.6% 93.3%
3748189 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 40.0 4.96e-01 89.0% 98.8%
4048167 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 36.0 4.78e-01 90.6% 100.0%
3502939 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 42.0 4.96e-01 72.4% 95.6%
4140206 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 39.0 4.75e-01 86.6% 94.1%
4260316 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 38.0 4.65e-01 94.5% 96.2%
3846927 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 36.0 4.17e-01 87.4% 78.9%
4487255 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 35.0 4.42e-01 95.3% 96.0%
3408936 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 36.0 4.18e-01 84.3% 82.2%
3550395 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.60 36.0 4.21e-01 93.7% 83.3%
4137746 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 36.0 4.33e-01 93.7% 89.4%
3370322 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 35.0 4.09e-01 94.5% 82.2%
3678841 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 35.0 4.19e-01 99.2% 90.6%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.57 32.0 4.15e-01 83.5% 98.6%
3705941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 33.0 4.06e-01 90.6% 91.3%
3617638 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 38.0 4.15e-01 89.8% 81.9%
3676562 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 3.37e-01 77.2% 90.7%
3319893 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 37.0 4.10e-01 98.4% 91.0%
3782338 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 37.0 4.25e-01 97.6% 100.0%
5019700 5090.1.1.6 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.51 29.0 3.25e-01 83.5% 69.0%
3289911 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.51 27.0 2.73e-01 92.9% 47.4%
5012319 3794.1.2.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.50 29.0 3.55e-01 81.9% 87.1%